Molothrus ater (brown-headed cowbird): 118689357
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Entry
118689357 CDS
T11569
Symbol
PRPF38B
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118689357 (PRPF38B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mate03041
]
118689357 (PRPF38B)
Spliceosome [BR:
mate03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
118689357 (PRPF38B)
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Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
118689357
NCBI-ProteinID:
XP_036243461
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All DBs
Position
9:complement(10289318..10298692)
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AA seq
546 aa
AA seq
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MANNSPAVANCQGQQVAQHPPGAVPPVQQPLQSGGPKPAASGKQGNVLPLWGNEKTMNLN
PMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGV
GTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFE
SFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKAIDQQIKSRPRK
IKKDGKEGMEEIDRHAERRRSRSPRPRSISPRRSPRRSRSRSHHREGHGSSSFDRELERE
RERQRLEREAKEREKERRRSRSTDRSLERRRSRSRDRYRSRSRSRDRKGDRRDRDREREK
ENERSRKKERDYDKERGSEREKDRSRERSKERKSKGDTEERRHKDDKDEKKHRDDKRDSK
KERKHSRSRSRERKHRSRSRSRNTGKRSRSRSKEKSSKHKNENKEKSNKRSRSRSRGRTD
SVEKSRKRDQSPSKEKSRKRSRSKERSHKHDHSDSKDHSDKHDRRRSQSTERESQEKQQK
NKDETV
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacagccccgcggtggcgaactgccaggggcagcaggtggcccagcacccg
cccggcgccgtcccgcccgtgcagcagccgctgcagagcgggggccccaagccggcggcc
tcgggcaagcagggcaacgtgctgccgctgtggggcaacgaaaagaccatgaatctgaac
cctatgatcctcaccaacatcctctcgtcgccctacttcaaggtgcagctctacgagctc
aagacctaccacgaagtggtggacgagatctatttcaaggtaacacatgttgaaccatgg
gaaaagggcagcagaaaaacagcaggccagacagggatgtgtggaggggtgcgtggtgtt
ggaactggaggaattgtgtctactgctttttgtctgctctacaaattatttacactgaag
ctcactcgtaaacaagtgatgggccttatcactcatacagactccccatatattagggct
cttggatttatgtatattaggtacacacagccacctacagatctatgggactggtttgaa
tcctttcttgatgatgaagaggacctggatgtgaaggcaggtgggggttgcgttatgacc
ataggggagatgcttcgttccttcctcactaagcttgaatggttttccacattgtttcca
agaattcctgtgccagtccagaaagccattgaccagcaaattaaaagcagacctagaaaa
atcaagaaagatggcaaggaggggatggaagaaatagaccggcatgcagaacgtagacgt
tcaaggtctccaagaccaagatccatcagtcccaggaggtctcccagaagatccagaagc
agaagtcaccatcgggaaggccatggatcatctagttttgatagagaactagaaagagaa
cgagaacggcagagattagaacgtgaagcaaaggagagagaaaaagaaaggcggagatcc
cgaagtaccgatcgctcactagaacggaggcgaagcagaagcagggacagatacagaagc
cggagtcgaagtcgtgacaggaaaggagatagaagagacagggacagggagcgagagaaa
gaaaatgagcggagtcggaaaaaagagagagattatgataaagaaagaggtagtgagagg
gaaaaagatcgatctagagaaaggtcaaaagaaaggaaaagtaagggtgacacagaggag
aggagacacaaggatgacaaagatgagaagaaacaccgcgacgacaagagggattccaaa
aaagagagaaagcatagtagaagtcgaagccgggaaagaaagcataggagtaggagccga
agcaggaacacaggtaagcgcagcagaagcaggagcaaagaaaaatcaagtaaacataaa
aatgaaaataaggagaagtcaaataaaagaagcagaagcagaagcagaggaagaacagat
agtgttgagaagtccagaaaacgagatcagagtcccagcaaagaaaaatctaggaagcgt
agcagaagcaaagaacgatcccacaaacatgatcacagtgatagcaaggaccattctgac
aaacatgatcgtcgaaggagccaaagtacagaacgagagagccaagaaaagcaacagaaa
aacaaagatgagactgtgtga
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