Molothrus ater (brown-headed cowbird): 118689409
Help
Entry
118689409 CDS
T11569
Symbol
TNR
Name
(RefSeq) LOW QUALITY PROTEIN: tenascin-R
KO
K06252
tenascin
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate04510
Focal adhesion
mate04512
ECM-receptor interaction
mate04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118689409 (TNR)
04518 Integrin signaling
118689409 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118689409 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mate00536
]
118689409 (TNR)
Glycosaminoglycan binding proteins [BR:
mate00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118689409 (TNR)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
EGF_Tenascin
Fn3_PBP1
Fn3_Dep-1_3rd
Pur_ac_phosph_N
Fn3_VIN3
Fn3_ROS1
Fn3_Dep-1_2nd
FN3_Tor_3rd
EGF_2
Lzipper-MIP1
TSC22
Motif
Other DBs
NCBI-GeneID:
118689409
NCBI-ProteinID:
XP_036243555
LinkDB
All DBs
Position
9:4672790..4756590
Genome browser
AA seq
1356 aa
AA seq
DB search
MGTDGENPILRSVVISFNLLLLGAVLKPFECRLEVTTEPAERTAVDEAAGLTNCSPPTKE
QPMVFHHIYNINIPLDSCCSSMFKSSGEEVSSEDDRLAEYTEQTSDSESQVTFTHRINMP
KQACKCSTSLPSLQELLSRIEMLEREVSILRDQCTSNCCQENAATGQLDYIPQCSGHGNF
SLESCSCVCTEGWAGSNCSEPLCPGGCSSRGVCLEGQCICDSDYGGEDCSQPRCPAGCGS
RGLCVDGECVCEEGFTGDDCSELRCPRDCSGRGRCVNGTCECQEGFGGPDCGRQRCPAGC
GGRGLCRDGLCVCERGYGGHDCSAVSPPENLRVTGIGDSSIELAWDSPGAATEYVVSYQP
AVPGGTQLQQRVPGDWSSITITDLEPGVAYNVSIYAVISDAFSTPVTSRVMTNLATPQGL
KFKTITETTAEVQWEPFSFPLDGWEISFIPKNNEGGVIAQLPSTVTTFNQTGLKPGEEYT
VTVVALKEQARSPPTSDSVSTLIDGPTQILVRDVSDTVAFVEWSPPRAKVDAILLKYGLA
DGEGGRTTFRLQPPLSQYSLQALRPGARYHLAVSALRGANESRPAFAQFTTEIDAPKNLR
VGSRSPASLELAWDNSEAEAQSYRVVYSTLAGEHYHELLVPRHAGPTTRATLADLVPGTE
YGIGISAVMDSQQSVPATMNARTELDSPRDLLVTASTETSISLAWTKATGPIDHYRVTFT
PASGMASEVTVSRDESQLTLSELEPGTEYTISIIAERGRQQSLEATVDAFTGVRPISQLH
FSQLTSSSVNVTWSDPSPPADRLILTYSRRDEEEEAQQVTLDGTRRHTSLTGLQPSTEYL
VSLVAVHGTISSEPVVGSITTGIDAPKDLRVGNVTQESMMVYWSAPIAAFDHYRISYRAA
EGRTESMAISRVATEYTLQDLQPATKYEIELKSVRGREESELASITAYTAMDVPLGVTAT
NITPTDALLQWNPPLSEVESYVLILTHRAVAGETILVDGDNQEYQLTNLLPSTTYTVSMY
ATSGPLTSQTISTNFTTLLDPPTNLTASEVTRRSALLSWVPPVGEIENYIMTYRSSDGSR
KELIVDAEDTWIRLEGLSETTEYTVHLQAAQNAVRSGLVSTTFTTGGRVFANPQDCAQHL
MNGDTLSGVYTISINGDLSQRVPVYCDMTTDGGGWIVFQRRQNGLTDFFRKWADYRVGFG
NLEDEFWLGLDNIHKITSQGRYELRIDMRDGQEAAYAYYDKFSIGDSRSLYKLRIGDYNG
TSGDSLTYHQGRPFSTKDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGIN
WYHWKGHEFSIPFVEMKMRPYNHRNISGRKRRSLQL
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggggactgatggtgaaaacccgatcctgaggagtgtggtcatcagcttcaacttgctt
ctgctgggcgctgtcctcaagccgtttgagtgccgcctggaggtgacgacagagccggcc
gagaggacagcggtggatgaggcagctggcctcaccaactgcagcccacccaccaaagag
cagcccatggtcttccaccacatctacaacatcaacatccccctggacagctgctgctct
tccatgttcaagtcttcgggcgaggaggtgagttcagaagacgaccggctggcagagtac
acggagcagacctccgacagcgagagccaggtcaccttcacccacaggataaacatgccc
aagcaggcctgcaagtgctccacctccctcccatccctgcaggagctgctgagcaggatt
gagatgctggagagggaggtctccatcctccgggaccaatgcacctccaattgctgccaa
gaaaatgcagccacagggcagctggattacatccctcagtgcagcggccacgggaatttc
agcctggagtcgtgcagctgcgtgtgcacggagggctgggcgggcagcaactgctcggag
ccgctgtgccccgggggctgctccagccgcggcgtgtgcctggagggacagtgcatctgc
gacagcgactacgggggcgaggactgctcccagccgcgctgccccgccggctgcggctcc
cgcgggctctgcgtggacggcgagtgcgtgtgcgaggagggattcaccggggacgactgc
tcggagctgcgctgcccccgcgactgctcgggccgcggccgctgcgtgaacggcacctgc
gagtgccaggagggcttcggcggcccggactgcggccggcagcgctgccccgccggctgc
ggcggccgcgggctctgccgcgacgggctctgcgtctgcgagaggggctacggcgggcac
gactgctccgcagtgtctccccctgagaacctgcgggtgacggggatcggcgacagctcc
atcgagctggcctgggacagccccggggcagccactgagtacgtggtgtcctaccagcct
gccgtgccagggggcacccagctccagcagagggtgcctggggactggagcagcatcacc
atcacggatctggagccaggtgttgcctacaatgtcagcatctatgcagtcatcagtgat
gccttcagcacccctgttacctccagggtgatgaccaacctcgccacaccacaggggctg
aagttcaagactatcacagagacaacagcagaggtgcagtgggagcccttctccttcccc
ttggacggctgggagatcagcttcatccccaagaataacgagggtggtgtgattgcccag
ctccccagcaccgtcaccaccttcaaccagacggggctgaagccgggggaggagtacact
gtcaccgtggtggccctgaaggaacaagccagaagccctcccacctctgacagcgtctca
accctcatcgacggcccgacgcagatcctggtgcgggacgtctcggacacggtggccttc
gtggagtggagccctcctcgcgccaaggtggacgccatcctgctgaagtacgggctggcg
gacggggagggcggcaggaccaccttccgcctgcagccccccctcagccagtactccctg
caggccctgcgccccggcgcccgctaccacctcgccgtcagcgccctgcgcggcgccaac
gagagccgccccgcctttgcacagttcaccacagagatcgacgcccccaagaacctgcgg
gtgggctcgcggagccccgccagcctcgagctcgcctgggacaacagcgaggccgaggca
cagagctacagggtggtctacagcaccctggccggggagcactaccacgagctcctggtg
ccgcgccacgccggccccaccacccgcgccaccctcgcagatctggtgccgggaacagag
tatggcattgggatttcagctgtgatggacagccagcagagtgtgccagcgaccatgaat
gccaggactgagcttgacagcccgcgggacctgctggtgacagcctccactgagacgtcc
atctcactggcctggaccaaagccacgggtcccatcgaccactaccgcgtcaccttcacc
cctgcctcgggaatggcctcggaagtgacagtgtccagggacgagtcacagctcaccctc
tcggagctggagcccggcacagagtacaccatctccatcatcgctgagaggggacggcag
cagagcctggaggccaccgtggatgccttcacaggcgttcggcccatctcacagctgcac
ttctcccagctgacatcctccagtgtgaatgtcacatggagtgacccatccccaccagca
gaccgcctcatcctcacctacagccgccgggacgaggaggaggaggcccagcaggtcaca
ctggatggcacccgcaggcacaccagcctgacgggcttgcagccatccacagagtacctg
gtgtccttggtggccgtgcatggcaccatcagctctgagcctgtcgtgggctccatcacc
acagggattgatgcaccaaaggacctcagggtgggcaatgtcacccaggagtccatgatg
gtctactggagtgctcccattgctgcctttgaccactacaggatatcctaccgtgctgcc
gaaggaaggacagagagcatggccatctccagggttgccactgagtacaccctccaggac
ctgcagcctgccaccaagtatgagatcgagctgaagagtgtgcggggccgggaggagagt
gagctggcctccatcactgcatacacagccatggatgtccccctgggggtcacagccacc
aacatcactcccaccgacgcgctgctgcagtggaacccgccgctgtcggaggtggaaagc
tacgtcctcatcctcacccaccgtgcagttgcaggagaaacaattctcgtggatggagac
aaccaggagtaccagctgacaaacctgctgcccagtaccacctacacagtgtctatgtat
gccaccagcgggcctctcaccagccagaccatcagcaccaacttcaccactcttttggat
cctccaaccaatctgacagccagcgaagtcacacgacggagcgccctgctctcctgggtt
cctcccgtaggagagattgagaattacatcatgacctacagatccagcgatggcagcagg
aaggagctgattgtggatgcagaggacacgtggatccgtctggaggggctttctgagacc
acggagtacacggtgcacctgcaggctgcccagaacgccgtgcgcagcggcctcgtctca
accaccttcaccacaggaggacgtgtgtttgctaaccctcaggattgtgcccagcacctg
atgaacggagacacgctgagcggggtctacaccatctccatcaacggggacctcagccag
cgggtgcccgtgtactgtgacatgaccactgacggagggggctggattgtcttccagcgg
cggcagaacgggctaaccgatttcttccggaaatgggcagattaccgcgttggctttgga
aacttggaggatgagttttggctgggcttggacaacatccataagatcacatcccaaggg
cgctacgagctgcggatagacatgagggatggccaggaggcagcatatgcctactatgac
aaattctccattggtgactccaggagcctctacaaactgcgcattggggactacaatggc
acttcaggagactccctcacctatcaccaggggcgccccttctccaccaaggacagggac
aacgatgttgctgtgaccaactgtgccatgtcctacaaaggggcctggtggtacaagaac
tgccaccgcaccaacctcaacggcaagtacggagagtcccggcacagtcaggggattaac
tggtaccattggaaaggccacgagttctccatcccctttgtggaaatgaagatgcgacct
tacaaccaccgtaacatctctgggaggaagagacggtccctacagctctga
DBGET
integrated database retrieval system
