KEGG   Molothrus ater (brown-headed cowbird): 118690103
Entry
118690103         CDS       T11569                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
mate  Molothrus ater (brown-headed cowbird)
Pathway
mate03030  DNA replication
mate03410  Base excision repair
mate03420  Nucleotide excision repair
mate03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mate00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    118690103 (RFC4)
   03410 Base excision repair
    118690103 (RFC4)
   03420 Nucleotide excision repair
    118690103 (RFC4)
   03430 Mismatch repair
    118690103 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mate03032]
    118690103 (RFC4)
   03036 Chromosome and associated proteins [BR:mate03036]
    118690103 (RFC4)
   03400 DNA repair and recombination proteins [BR:mate03400]
    118690103 (RFC4)
DNA replication proteins [BR:mate03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    118690103 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    118690103 (RFC4)
Chromosome and associated proteins [BR:mate03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    118690103 (RFC4)
DNA repair and recombination proteins [BR:mate03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     118690103 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    118690103 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 AAA_lid_RFC1 Rad17 AAA_16 AAA_11 AAA_22 AAA_30 SLFN-g3_helicase Mg_chelatase DUF815 AAA_14 AAA_24 RuvB_N AAA_19 AAA_5 TIP49_C AAA_28 DNAX_ATPase_lid ParB ResIII AAA_7
Other DBs
NCBI-GeneID: 118690103
NCBI-ProteinID: XP_036244711
UniProt: A0A7L3VR30
LinkDB
Position
10:complement(17591194..17603322)
AA seq 362 aa
MQAFLKGPASISTKPVAAKEKNAAGSSGEGKRTKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSFEKLETLAKNLINEGFA
VAQLVNQLHDTIVESEDYSDKQKSAIVEKLAEVDKCLADGADEFLQLMSLCALVMQQLTQ
NI
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaagggtccggcctctatcagcaccaagcccgtcgctgccaaggaa
aagaacgcggccgggagcagcggggagggcaagaggaccaaacccatcccctgggtggag
aaatatcgtcccaaaaatgtggatgaagtcgccttccaggatgaagttgtagctgtgctg
aagaagtccctggaaggtgctgatcttcccaatctgttgttctatggcccacctggaact
ggaaagacttccactattttagcagctgctagagaactgtttgggcctgatttattccgg
cagagagtccttgagctgaatgcctctgatgagcgtgggatacaagtgatccgggagaag
gtgaaggcttttgctcagctaacggcctctgggagccgttcagatggtaaaatgtgtcct
ccttttaaaattgtgatcctggatgaagcagactctatgacttcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatctaaaacaacacgtttctgtcttatttgtaactac
atcagcagaataattgaacctttaacgtctcgatgctccaaattccgcttcaagcctttg
tctgacagtatccagcagcagaggctgttggatgtgtctgagaaggaacatgtgaaaatc
agtaatgaggcagtgtcatacctggttaaagtgtcagaaggggacttaagaaaagcaatt
acttttcttcaaagtgccactcgcctaatgggtgggaaggagatcacagagaagataatc
actgaaattgctggggtaatccctaaagaaacaattgatgaactgctcttgggctgccag
agtggttcctttgagaaactggaaacactggcaaagaatctcatcaacgaggggtttgct
gttgctcagcttgtaaaccagctgcatgacaccattgtggagagtgaagattacagtgac
aagcagaaatctgccatagttgagaaacttgcagaagtggacaaatgcctggcagacggt
gctgatgaattcttgcagctgatgagtctctgtgcccttgtgatgcagcagctcacacag
aacatctga

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