Molothrus ater (brown-headed cowbird): 118691124
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Entry
118691124 CDS
T11569
Symbol
CNOT1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118691124 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mate03019
]
118691124 (CNOT1)
Messenger RNA biogenesis [BR:
mate03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118691124 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118691124 (CNOT1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
118691124
NCBI-ProteinID:
XP_036246076
LinkDB
All DBs
Position
12:13770272..13825703
Genome browser
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGISLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPXDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITMAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQDLVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLAMNPQVQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRALAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7128 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagtagtggcaaagattttcatcagactcaatttctgatccaagagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcgtacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctggctttactgaactctttcagctcagat
ctgcgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctctttgggcagaagggagcctttggggtaggacag
gagcagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctctaccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtgcaagtgttgaagaatgtcgcaacataatcatgcagttt
ggtgttcgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcaggattgacggatggtatttcattacaatctatttcggctcctggcagtgggatt
tggagtgatggcaaagataagagtgacggaagccaagcccatacctggaatgtggaggtc
ttgattgatgttcttaaagagctgaaccctagcctggacttcaaagtagtgacgtatgaa
ttggaccatccaggatttcagattcgtgatagcaagggactgcatattgtagtttttggc
atccagagagggctgggcatggaggtttttccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcatccaacattccctcataaaccctgacatcttctgt
tttgctgactatccttgccatactgttgccacagacatcctgaaagcaccacgagatgac
aatcgagaaattgctacatggaagagcctggatttgattgagtctctgttacgtttggca
gaagtggggcagtatgaacaggttaagcagctcttcagttttcctatcaagcattgccca
gatatgctggtattggccttactgcagatcaacacgtcctggcacaccttgcgccatgaa
ctcatctccaccctcatgccaattttccttggcaaccatcccaactcagccatcattttg
cactatgcatggcatggacagggtcagtctccttcaattcgtcagcttatcatgcatgcc
atggcagagtggtacatgagaggggagcagtatgaccaggcaaaattgtcacgtattctt
gatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgccttt
gttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatggctc
acagataaaattcgggaacatggggaacctttcatccaggcctgtatgactttcttaaag
agaagatgtccatctatcctgggtggccttgctccagaaaaggatcagcccaaaagtgct
cagcttcctccagaaaccttggcgactatgttggcctgcctgcaagcttgtgctgggagt
gtttctcaggagctgtcagagaccatcctcaccatggtagcaaactgcagcaatgtcatg
aacaaggctcggcagcccccgcctggggtcatgcccaaaggacgcccgcccagcgccagc
agcttggatgccatctctcctgtgcagatcgactcgcttgcgggaatggcctctcttagt
ttaggtggctcagctgctccccacacccagagcatgcaaggcttccctccaaacttgggc
tctgcattcagtactcctcagtcaccagcaaaagcgttcccacctctttccacccaaaac
cagacaaccggtttcagtggcattggaggactttcctcacagcttccagtaggtggtctt
actacgggtagcctgactggcataggaactggagccctgggccttcctgcagtgaacaat
gacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccagcag
agtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcactttagc
aaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccaccacac
ccaaccatgtctgtggatgaggttttggaaatgctgcagaggtttaaggactccaacatt
aaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaatatcgattc
ttcccccagtacccagacaaagagctgcacataacagcctgtctctttgggggcatcata
gagaaaggactggttacttacatggcattgggcctggccctgcgctatgttcttgaagcc
ttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagatagattt
aaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcacttt
atacagttcccacatcatttacaggagtacatagaatatggacagcaatccagagatcct
cctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggctcag
gcccaggcccaggttccagcaaaagctcctcttgctggccaagtcagcactatagtgacc
acctcaaccaccaccaccgttgcaaaaaccattacaatcacccgaccaactggagtcagc
ttcaagaaagatgtgccgccttccattaatactaccaacattgatacgctgttagtagca
acagatcaaacagagaggattgtggaacctccagagaatgtccaggaaaaaattgctttc
atcttcaataatctgtctcagtcaaatatgacacagaaggtggaagaattgaaggaaaca
gtgaaagaagagttcatgccttgggtatcacagtatcttgtgatgaaaagagtcagtatt
gagcctaactttcacagcttgtattcaaacttccttgacacacttaagaatccagagttt
aataaaatggttctgaatgaaacctacagaaatatcaaggtgctattgacatcagataaa
gctgcagccaacttctcagaccgttccttgttgaagaaccttggtcactggctgggaatg
ataacgatggctaaaaataagcccatcttgcacacggatttggatgtgaagtcactacta
ctggaagcatatgttaagggacagcaggaattgctttatgtagtgccatttgttgccaaa
gtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaacccatggacaatggcc
attatgaatgttttagctgagctacatcaggaacatgatctaaaattgaatctgaagttt
gagattgaggtgctctgcaagaatcttgcactagacatcaatgagctgaaacctggaagt
ctcctgaaagataaggaccgtctgaaaaatctggatgagcagctgtctgcgccaaagaag
gatgtgaagcagccagaagagctaccacccatcacaacaaccactgcttctacaactcca
gctaccagcaccacttgcacagccacggttcctccacagccccagtacagttaccatgac
atcaatgtctattctttaggaggcttggctccacacattaccttaaatccaacgattccg
ctgttccaagcgcacccgcagctgaagcagtgtgtgcggcaggccatcgagcgggcggtg
caggacctcgtccatcccgtggtggacaggtccatcaagattgccatgaccacctgtgag
cagatagtcaggaaggactttgccctggattccgaggagtcccggatgcgtgtggccgct
caccacatgatgaggaacctgactgctggcatggccatgattacctgcagggagcctttg
ctgatgagcatagctaccaacttgaaaaatagctttgctactgcactgagggcagcctcc
ccacagcagagggacatgatggagcaggcagctgcccagttagcacaggataactgtgag
cttgcctgctgctttatccagaagacagctgtggaaaaggcaggccctgagatggacaag
aggctcgcaactgaatttgagctcaggaagcatgctaggcaagaggggcggcgctactgc
gaccctgttgtgttaacgtaccaggctgagcggatgccagaacagatcaggttaaaggtt
ggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaatgtccctggc
ttcttgcccaccaatgacttaactcagcctacaggattcttggctcagcctatgaagcaa
gcttgggctacagatgatgtagcacagatttatgacaaatgtatgacagaactggagcag
cacctacaatccattccacacaccctggccatgaatcctcaagtccaagccctgcgcagc
ctcttggaggcggtggtggtggctcggaactcccgggatgcgattgctgcacttggacta
ctgcagaaggctgtagagggcttgctggatgccaccagtggggctgatgctgacctcctg
ctccgctaccgtgagtgtcacctgctggtgctgaaggctctgcaggatggccgtgcctat
ggatctccgtggtgtaacaaacaaatcactaggtgcctgattgaatgcagagacgagtac
aaatacaacgtggaagctgtggagctgctaatccgcaatcaccttgttaacatgcagcag
tatgaccttcacttggctcagtccatggagaatggcttgaactacatggctgtggcattt
gccatgcagttggtaaagatcttgttggtggatgagagaagtgttgcccatgtaacagaa
gcagatctgtttcacaccattgagacactcatgagaattaatgctcattccagaggaaac
gccccggaaggattaccccagctgatggaagtggtccgatcaaactatgaagcaatgatt
gaccgtgctcatggaggtcctaatttcatgatgcattcaggaatttcccaagcttctgag
tatgatgacccaccaggcctgagggagaaggcagaatacctgctgagggagtgggtgaac
ctctaccattcagctgcagcaggccgtgacagtaccaaagcattctctgcgtttgttgga
cagatgcaccagcaggggatcctgaaaacagatgacctgatcacccgttttttccggctc
tgcaccgaaatgtgtgttgagatcagctatcgagccctggccgagcagcagcacaaccct
gcagccaaccccaccatgattcgagccaagtgctaccacaacctggatgcctttgtgcga
ctcattgcactgctggtgaagcactctggggaggcaaccaacacagtcacaaagatcaac
ctcctgaataaggttcttggtattgtggtgggagttcttctgcaagaccatgatgttcgg
cagagtgagttccagcagcttccttaccatcgcattttcatcatgttgctgttggagtta
aatgctcctgagcatgtgctggagaccatcaacttccagacactcacagctttctgtaac
acatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctggaactg
atctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaagggttgg
cctatgtatgcccagttattgatcgatctattcaagtacttggctcctttccttagaaat
gtggaactcaccaagcctatgcaaattctttataagggcactctgcgtgtgttgctggtc
ttgttgcatgatttcccagaatttctttgtgactaccactatgggttctgtgatgtgatc
ccacctaactgtattcagctaaggaatctgatcctgagtgccttcccacggaacatgagg
cttccagaccctttcacccccaacctaaaggtggacatgttaagtgagattaatattgct
ccacgaatactcacgaatttcactggagtgatgccacctcagttcaagaaagacttggat
tcctatctcaaaacccgttctccagtcacctttttgtctgacttgcgaagcaacctacaa
gtatcaaatgaacctggcaaccgctacaacatccagctgattaatgcactggtgctctac
gtaggtactcaagcaattgcacacattcacaacaaaggcagcacaccctccatgagcacc
attacccactcagctcacatggacatcttccagaatttggcagtcgacctggatactgaa
ggccggtacctcttcctgaacgccatcgccaaccagctgcgctaccccaacagccacacc
cactacttcagctgcaccatgctctacctgtttgcagaggccaacacagaggccatccag
gagcagatcaccagggttctcttggaacgactgattgtaaataggcctcatccctggggt
ctcctgatcaccttcattgagctgatcaaaaatccagcctttaagttctggaaccatgag
tttgttcactgtgctccagaaattgagaagttgttccagtcggttgcacaatgctgcatg
gggcagaagcaggcccagcaagttatggaaggtactggtgccagttag
DBGET
integrated database retrieval system
