Molothrus ater (brown-headed cowbird): 118693887
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Entry
118693887 CDS
T11569
Symbol
ALYREF
Name
(RefSeq) THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate03013
Nucleocytoplasmic transport
mate03015
mRNA surveillance pathway
mate03040
Spliceosome
mate05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118693887 (ALYREF)
09122 Translation
03013 Nucleocytoplasmic transport
118693887 (ALYREF)
03015 mRNA surveillance pathway
118693887 (ALYREF)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
118693887 (ALYREF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mate03019
]
118693887 (ALYREF)
03041 Spliceosome [BR:
mate03041
]
118693887 (ALYREF)
Messenger RNA biogenesis [BR:
mate03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118693887 (ALYREF)
TREX complex
118693887 (ALYREF)
Spliceosome [BR:
mate03041
]
Complex C
Other components
EJC/TREX
118693887 (ALYREF)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118693887 (ALYREF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
F07F6_N
Motif
Other DBs
NCBI-GeneID:
118693887
NCBI-ProteinID:
XP_036250672
LinkDB
All DBs
Position
19:complement(12811077..12815114)
Genome browser
AA seq
254 aa
AA seq
DB search
MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP
VMARGGGRNRPAPYSRPKQLPEKWQHDLFDSGFGAGAGVETGGKLLVSNLDFGVSDADIQ
ELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS
QIDTQRRPAQSVNRGGMTRNRGVLGGFGGGGNRRGTRGGNRGRGRGAGRTSKQQLSAEEL
DAQLDAYNARMDTS
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaagatggacatgtccctggacgacatcattaagctcaaccggagccagcgc
ggggccagccggggcggccggggcggccggggccggggcggcaccgcacgcgggggcggg
cccggccggggcggcgttggcggcgggcgcgcgggcggcggccccgtgcggaaccggccg
gtgatggcccgaggcggcggcaggaaccggcccgcgccctacagccggccgaagcagctc
ccggagaagtggcagcacgacctgttcgacagcggcttcggggcgggggccggcgtggag
accggcggaaagctgctcgtctccaacctggacttcggcgtctcggatgcggacatccag
gagctctttgcagagtttgggaccttgaagaaggcagctgtgcactatgacaggtctggc
cgcagcctaggaacggcagacgtgcatttcgagaggaaggctgatgcactgaaggccatg
aagcagtacaacggggtgcccttggatgggcgccccatgaacatccagctggtcacgtca
cagatcgacacgcagcggagaccagcacagagtgtaaacagaggtggcatgaccaggaac
cgcggggtcttggggggatttggaggtggaggcaacaggcgagggactcgtggtgggaac
agagggagaggcagaggagctggaagaacttccaaacagcagctctctgcagaagaacta
gatgcacagctggatgcttacaatgccaggatggacaccagctaa
DBGET
integrated database retrieval system
