Molothrus ater (brown-headed cowbird): 118694096
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Entry
118694096 CDS
T11569
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118694096 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mate03041
]
118694096 (PRPF8)
Spliceosome [BR:
mate03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118694096 (PRPF8)
Complex C
U5 SnRNP specific factors
118694096 (PRPF8)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
118694096
NCBI-ProteinID:
XP_036250916
LinkDB
All DBs
Position
21:complement(6533583..6552282)
Genome browser
AA seq
2335 aa
AA seq
DB search
MAAVFPYRGGCAPVPNPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtgttcccgtaccgcggcggctgcgccccggtgcccaacccgctggcgccg
ctgcccgactacatgtccgaggagaagctgcaggagaaagcccgcaagtggcagcagctg
caggccaagcgctatgcggagaagaggaaattcggcttcgtggacgcgcagaaggaggac
atgccccccgagcatgtccgcaaaatcatccgcgaccacggcgacatgaccaataggaaa
ttccggcacgacaagcgcgtctacctgggtgctctgaagtacatgccccatgctgtgctg
aagctgctggagaacatgcccatgccctgggagcagatccgcgacgtgcccgtcctgtac
cacatcaccggcgccatctcctttgtcaacgagatcccctgggtcatcgagcctgtctac
attgcccagtggggctccatgtggattatgatgaggcgggagaagagggaccggcgtcac
ttcaagaggatgagattccccccgtttgatgatgaagaaccccctctggattatgctgat
aacatcctggatgtggagcccctggaggccattcagctggagctggatccagaggaggat
gcccctgtgctggactggttctacgaccaccagcccctgaaggacaacaggaagtatgtg
aatggctccacgtaccagcgctggcagttcaccctgcccatgatgtccaccctgtaccgc
ctggccaaccagctgctcactgacctggtggatgacaactacttctacctgtttgacctg
aaagcattcttcacctccaaggcactgaacatggccattcctggaggtcccaagtttgag
cccctcgtcagagatatcaatcttcaggatgaagactggaatgaatttaatgacatcaac
aaaatcatcatcaggcagcccatcaggacagagtacaaaattgctttcccatacctgtac
aacaacctgccacaccatgtccacctcacctggtatcatactccaaacgttgttttcatt
aaaacagaagatcctgacctcccagctttttactttgatcctctgatcaaccccatttca
cacagacattctgtcaagagccaggaaccactgcctgatgacgatgaagagtttgagttg
ccagagtttgtggagcctttcctgaaggatacccctctgtacactgataacacagccaat
ggcattgccttgctgtgggcaccacgacccttcaacctgaggtctggcaggacccggaga
gctcttgacatcccactggtcaagaactggtaccgtgagcactgcccagcaggacagccc
gtcaaggtgagagtgtcctaccagaagctcctgaaatactatgtcctgaatgccctcaaa
cacagacctcccaaggcccagaagaagaggtacctgttccgctccttcaaggctaccaag
tttttccagtcgaccaagctggactgggtggaagttggcctgcaggtgtgtcgccagggc
tacaacatgctgaacttgctgatccacagaaagaacctgaattaccttcacttggattac
aacttcaacctgaagcctgtgaagaccctcaccacaaaggaaagaaaaaaatcccgtttt
gggaacgctttccatctgtgccgagaggtcctgcggctgactaagctggtggtggacagc
cacgtccagtacagactgggaaatgtggatgcatttcagctggcagatggcctgcagtac
atctttgcccatgtgggtcagctcacggggatgtaccggtacaaatacaaactgatgagg
cagattcgaatgtgcaaggacttgaagcatctcatctactacaggtttaacacagggcct
gtgggcaaaggtcctggctgtggtttctgggctccaggctggagagtgtggctgttcttc
atgaggggcatcaccccactgctggaacgctggctggggaatctgctggccaggcagttt
gaaggccgtcactccaagggtgtcgcaaagactgtcacgaagcagcgcgtggagtctcac
tttgacctggagctcagggcagctgtgatgcatgacatcctggacatgatgccagaaggg
atcaagcagaacaaagccagaaccatcctgcagcacctgagtgaggcttggcgctgctgg
aaggccaatattccctggaaggtgccagggctgccaactcctattgagaacatgatcctg
aggtatgtgaaggccaaagctgactggtggacaaacacagctcactacaaccgggagcgg
atccgccggggcgccacagtcgacaaaaccgtctgtaagaagaacctgggcaggctgacc
agactctacctgaaagctgagcaggaacggcagcataattacctgaaggacgggccttac
atcactgcagaagaggctgttgctgtgtacacaaccacagtgcactggctggagagcagg
aggttctcccccattcctttcccaccactgtcctacaagcatgacaccaagttgctgatc
ttagccctggagaggctgaaggaagcttacagtgtgaaatcacgcctgaatcagtcacag
agagaggagctgggcttgattgagcaggcttatgataatccccacgaagctctgtccaga
atcaagcgtcatctgctgactcagagagccttcaaggaggtgggaattgagttcatggat
ctctacagccacttggtccctgtttatgatgttgagcccctggagaagatcacagatgct
tatctggatcagtacttgtggtatgaggctgataagcgaaggctcttccctccttggatc
aaacctgctgacactgaaccacccccactgctggtgtacaagtggtgccaaggcatcaat
aacctgcaggatgtttgggaaacgagtgaaggggagtgcaacgtgatgctggagtctcgg
tttgagaagatgtacgagaagattgacctgaccttgctcaacaggctgctgcgtctcatc
gtggatcacaacattgctgactacatgacagccaagaacaacgtggtgatcaactacaag
gacatgaatcacacaaactcctatgggattatccgtgggctgcagtttgcttccttcatt
gtccagtactacgggctcgtgatggacctgctggtgctgggcctgcacagggccagtgag
atggcagggcctccccagatgccaaatgacttcctcagcttccaggacattgccacggag
gtggctcatcccattcgcctcttctgcagatacattgacaggattcacatcttcttcagg
tttacagctgacgaggcaagggacctcatccagaggtacctgacagagcaccccgacccc
aacaacgagaacatcgtgggctacaacaacaagaagtgctggccccgggacgctcgcatg
cgcctcatgaagcacgatgtgaaccttggccgtgctgtgttctgggacatcaagaaccgt
ttgccccgctcggtgaccacggtgcagtgggagaacagcttcgtgtccgtgtacagcaag
gacaaccccaacctgctgttcaacatgtgcggcttcgagtgccgcatcctgcccaagtgc
cgcaccagctacgaggagttcacccacaaggatggggtctggaacctgcagaacgaggtg
accaaggagcgcacggctcagtgcttcctgcgtgtggatgatgagtccatgcagaggttt
cacaacagagtgaggcagatcctcatggcctctggctccacgaccttcactaagattgtc
aataaatggaacacagctctgattggcttgatgacttatttccgggaagctgttgtaaat
actcaggagctgcttgatttgctggtgaagtgtgagaataaaatccagactcggatcaag
attggcctgaattccaaaatgcccagccgttttcctcctgtggtgttctacacccctaag
gagctggggggtctgggcatgctctccatgggccatgttctcatccctcagtctgacctg
aggtggtccaagcagacagatgttggcatcactcacttccgctcgggaatgagtcatgag
gaggatcagctcatccccaacctgtaccgttacatccagccatgggagagtgaattcatt
gactctcagagggtgtgggcagagtatgccctgaaacgacaggaggctatagcccagaac
aggcgtctgaccctggaggatctggaggactcatgggacaggggaattcctcggattaac
accctgttccagaaggacaggcacactctggcttatgataaaggatggagagtcaggact
gacttcaaacagtatcaggtgctgaagcagaacccgttctggtggacgcaccagcgccac
gatggcaaactctggaacctgaacaattaccgcacggacatgatccaggctctgggcggc
gtggaagggatcctggagcacacactcttcaagggcacctacttccccacgtgggagggt
ctcttctgggagaaggccagtggcttcgaggagtccatgaagtggaagaagctgacaaat
gcccagagatcgggtttgaaccaaattccaaacagaagattcactctctggtggtctcct
accatcaacagagccaacgtgtacgttgggttccaggtgcagctggatttgacagggatc
ttcatgcatggcaaaatccccacactaaagatttccctcatccagattttccgagctcac
ttgtggcagaagatccatgagagcattgtcatggatttgtgtcaggtgtttgatcaagag
ctggatgctctggagattgagacagtgcagaaggagacaatccatcccaggaagtcctac
aagatgaactcctcatgtgcagatatccttctctttgcttcctacaagtggaatgtgtca
cgtccatccttgctggcagattccaaggatgtgatggacagcaccaccacccagaagtac
tggattgacatccagctgcgctggggcgactacgactcgcacgacatcgagcgctacgcc
agggccaagttcctggactacaccacagacaacatgagcatctacccctctcccactgga
gtgctcattgccattgatctggcctacaacttgcacagtgcttatgggaactggttccct
gggagcaaacctctgatccagcaggccatggccaaaatcatgaaagcaaaccctgccctg
tacgtgctgagggaacggatccgcaaagggctgcagctctactcctcagagcccacagag
ccctacctgtcctcccagaactatggggagctcttctccaaccagatcatctggtttgtg
gatgacaccaacgtgtacagagtcaccatccacaagacttttgaagggaatttgaccaca
aaacccatcaacggagccattttcatcttcaatcccagaactgggcagctcttcctgaag
atcatccacacctctgtgtgggcaggacagaagcgtctgggacagctggccaagtggaag
actgctgaagaagtggctgccttgatccgatccctccccgtggaggagcagccaaagcag
atcatagtgacacggaagggcatgttggacccacttgaggtgcacttgctggatttcccc
aatattgtgatcaaaggctcggagttgcagctgcccttccaggcctgtctgaaagtggag
aagtttggtgatctgatcctgaaggccactgaaccccagatggttctcttcaatctctat
gatgactggctgaaaaccatctcttcctacacagcgttctcccgtctgatcctgattctg
cgggcgctgcacgtgaataatgatcgagccaaagttatcctgaagccagacaagacaacc
atcactgagcctcaccacatctggccaaccctgacagatgaggagtggatcaaggtggag
gtgcagctgaaggatctcatccttgctgactatggcaagaagaacaacgtgaacgttgca
tccctgacccagtcagagatcagagacatcatcctgggcatggagatctctgccccatct
cagcagaggcagcaaattgcagaaattgagaagcaaaccaaggagcagtcacagctgacg
gccacgcagacccgcacggtgaacaaacacggggatgaaatcatcacctccaccaccagc
aactacgaaacccagaccttctcctccaagactgagtggagggtcagagcaatctctgct
gccaacctccacctgcggacaaaccacatctatgtctcatcagatgacatcaaggagaca
ggttacacctacattcttcccaaaaatgtgttgaagaagttcatctgcatctcagacctg
cgggcccagattgcaggttacctgtatggagtgagccctccagacaacccccaggtgaag
gagatccggtgcattgtgatggtgccccagtgggggacacaccagaccgtgcacctccca
gggcagctgccacagcatgagtatctcaaggaaatggaacctctgggatggattcacacc
caaccaaacgagtcccctcagctctcaccacaggatgtcaccacccacgccaaggtcatg
gctgacaacccctcctgggatggggagaagaccatcatcatcacctgcagtttcacccct
ggctcctgcacgctgacagcctacaagctgacccccagcgggtacgagtggggccggcag
aacacggacaagggcaacaaccccaaggggtacctcccctcccactacgagagggtgcag
atgctcctgtccgaccgcttcctcggcttcttcatggtcccagcacagggctcctggaac
tacaacttcatgggtgtccgccacgaccccaacatgaagtacgagctgcagctggccaac
cccaaggagttttaccacgaggtccatcgcccctctcacttcctcaacttcgcgctgctg
caggagggggaggtttactctgccgaccgcgaggatctctacgcctaa
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integrated database retrieval system
