Molothrus ater (brown-headed cowbird): 118695345
Help
Entry
118695345 CDS
T11569
Symbol
USP39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118695345 (USP39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mate03041
]
118695345 (USP39)
Spliceosome [BR:
mate03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
118695345 (USP39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
118695345
NCBI-ProteinID:
XP_036252741
LinkDB
All DBs
Position
28:complement(5131160..5135557)
Genome browser
AA seq
589 aa
AA seq
DB search
MSSRGRRDRESRESREPRGASAASASARASSRSRRDADGERPRGRRDAERERARREAAEA
LPVDLARVKREPGTGTGSSVWGGSGTAGPAAPVRVKREREPDGDSDPEPEPAVRYGRFDP
EDQRSRHCPYLDTINKSVLDFDFEKLCSISLSHINVYACLVCGKYFQGRGLKSHAYIHSV
QLSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTAQHIAHLDKQAKLSRAYDG
TTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEENYRRIQRPPGDIMFLLVQRF
GELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKNFQITKQGDGVEFLSWFLNALHAALGGT
KRKKKTIVTDVFQGSMRIFTKKLPHPDLPAEEKAQLLQNSEYQERMVESTFLYLTLDLPT
APLYKDEKEQLIIPQVPLFSILAKFNGSTEKEYKTYKENFLKRFQLTRLPPYLIFCIKRF
TKNNFFVEKNPTIVNFPITNVDLREYLSEEVQAAHSHTTYDLIANIVHDGKPSEGSYRIH
VLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRREEDETNQQQGA
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagccgcgggcggcgggaccgggagtcccgggagtcccgggagccccgcggggcc
tccgccgccagcgcctccgcccgcgcctcctcccgcagccgccgcgacgccgacggagag
cgcccgcggggccggcgggacgcggagcgggagcgcgcgcggcgggaggcggcggaggcg
ctgccagtggatctcgcgcgcgtcaagcgggaaccgggcaccggcaccgggagcagcgtc
tggggcggctccggtactgccgggcccgccgcgcccgtgcgggtgaagagggagcgggag
ccggatggagactccgaccctgagcccgagcccgccgtgcgttatgggcgcttcgacccc
gaggaccagcgcagccggcactgcccctacctggacaccatcaacaagagtgtcctggac
ttcgactttgagaagctctgctccatctccctgtcccacatcaacgtctacgcctgcctc
gtctgcgggaagtacttccagggccgcgggctgaagtcgcacgcctacatccacagcgtg
cagctgagccaccacgtgttcctcaacctgcacacgctcaagttctactgcctgcccgac
aactacgagatcatcgactcctccctcgaggacatcacgtacgtgctgaagcccaccttc
acagcccagcacatcgcccacctggacaagcaggccaagctgtcccgggcctacgatggc
accacgtacctgcctggcatcgtggggctcaacaacatcaaggccaacgactacgccaac
gctgtgctccaggccctgtccaacgtgcctcccctgaggaattacttcctggaggaggag
aactaccggcgcatccagcgcccgcccggggacatcatgttcctgctggtgcagcgcttc
ggggagctcatgaggaagctctggaacccccggaacttcaaggcacacgtgtccccccac
gagatgctgcaggccgtggtgctctgcagcaagaagaacttccagatcaccaagcagggg
gatggggtggagttcctgtcctggttcctgaacgcgctgcacgcggcgctgggcggcacc
aagaggaagaagaagaccatcgtcaccgacgtgttccagggctccatgcgcatcttcacc
aagaagctgccacaccctgacctgcccgccgaggagaaggcgcagctcctgcagaacagc
gagtaccaggagcgcatggtggagtccacgttcctgtacctgaccctggacctgcccacg
gcgccgctctacaaggacgagaaggagcagctgatcatcccccaggtgcccctgttcagc
atcctggccaagttcaacggcagcaccgagaaggagtacaagacctacaaggagaacttc
ctgaagcgcttccagctgacgcgcctgccgccctacctcatcttctgcatcaagcgcttc
accaagaacaacttcttcgtggagaagaaccccaccatcgtcaacttccccatcacgaac
gtggacctgcgggagtacctgtccgaggaggtgcaggccgcgcactcccacaccacctac
gacctcatcgccaacatcgtgcacgacgggaagccctcggagggctcctaccgcatccac
gtcctgcaccacggcacagggaagtggtacgagctgcaggacctgcaggtgaccgacatc
ctgccccagatgatcaccctgtccgaggcctacatccagatctggaagcgacgcgaggag
gacgagacgaatcaacaacaaggagcctga
DBGET
integrated database retrieval system
