Molothrus ater (brown-headed cowbird): 118696052
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Entry
118696052 CDS
T11569
Symbol
DROSHA
Name
(RefSeq) LOW QUALITY PROTEIN: ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
118696052 (DROSHA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mate03019
]
118696052 (DROSHA)
03009 Ribosome biogenesis [BR:
mate03009
]
118696052 (DROSHA)
03036 Chromosome and associated proteins [BR:
mate03036
]
118696052 (DROSHA)
Enzymes [BR:
mate01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
118696052 (DROSHA)
Messenger RNA biogenesis [BR:
mate03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
118696052 (DROSHA)
Ribosome biogenesis [BR:
mate03009
]
Eukaryotic type
90S particles
RNase
118696052 (DROSHA)
Prokaryotic type
rRNA processing factors
118696052 (DROSHA)
Chromosome and associated proteins [BR:
mate03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
118696052 (DROSHA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
DSRM_MRPL44
Cro
5_3_exonuc
YcaO
Motif
Other DBs
NCBI-GeneID:
118696052
NCBI-ProteinID:
XP_036253877
LinkDB
All DBs
Position
1:71947485..72021939
Genome browser
AA seq
1336 aa
AA seq
DB search
MSFHSGRGCPRGQGGPGARTSAQTYRPQNLRQLHPQQPSVQYQYEQQTAPPTTYSNPPAT
GYMPPRPDFVPYPPPVPPSTQNPISQCPMRPPFPNHQMRQSFPVPPCFPPTPPPVPNPSN
TPVPGTPAGQSTFPYMMPPPTVPHPPPPPVMPQQVSYQPVYSAGYSQQSFPPPSFNSYQH
SSGSFPSSTASNSAGSSHFRHTGQYQGEKSQSERRSPDRSKHYDEHRHREHGHMHGDRHR
SANHGDRRDRGRSPDRRRQESSRHRTDYDRGRISPHHRSYERNRERERERHRHRDSRRSP
SPDRSYKKDYKRAGSRSPSRERKRTRWEEDRERWSENQSSSKEKNYTAVKXKESEENASE
KNEEEDEELLKPVWVRCTHSESYYSNDPMDQVGDSTVVGTSKLRDLYEKFDEELGKRQAK
AKAARPPWEPPKTKLDEDLESSSESECDSEDDSSCSSSSDSDVIDVIAEIKRKKAHPDRL
HEELWYNDPGQMNDGPLCKCSAKARRTGIRHGIYPGEEPIKPCRPMTNNAGRLYHYRITV
SPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPE
NFCVRGLELFSSYLFKDILELYDWNLKGPSLENDSISCPRYHFMPRFVRFLPDGGKEVLS
MHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTSPGMKPSSVRIDQLD
REQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQADKQKL
SQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHVRYHQCLMH
LDKLIGYTFRDRCLLQLAMTHPSHHLNFGMNPDHARNXLSNCGIRQPKYGDRKVHHIHMR
KKGINTLINIMSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLAT
YRTAIVQNQHLAMLAKKLELERFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLE
EAKQLFGRLLFNEKDLRDVWLNYPLHPLQLQESNTDRQLIETSPVLQKLTEFEEAIGVIF
THVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLR
SSLVNNRTQAKVAEELGMQEFAITNDKTKRPVTLRTKTLADLLESFIAALYIDKDLEYVH
TFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTY
TVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIERKYRQELKELRWE
REHQERESEETEEARK
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccattctgggcgaggatgtccccgtggccaggggggaccaggagcaagaact
tcagcacagacctaccgccctcagaacctgcggcagcttcacccacagcagccctctgtg
cagtaccagtatgagcagcaaactgcccctccaacaacctactccaaccctcccgccacc
ggttacatgcctcccaggccagactttgtgccctatcctcctccagtgcccccttccaca
caaaatcccatcagccagtgtcccatgaggccaccatttccaaaccaccagatgcggcag
agcttcccagtgcctccatgtttccctcccactcctccaccagtgccaaaccctagcaac
actcccgtgccaggaacacctgctggacaaagcacctttccttacatgatgcctcccccc
acagtaccacaccctcccccgccgccagtcatgccacagcaggtcagctaccagcccgtg
tactcggcgggctactcgcagcagtccttcccgccgcccagcttcaacagctaccagcac
agctccggctccttcccgagcagcactgccagcaacagtgctggcagcagccacttccgg
cacacggggcagtaccagggagagaagtcccaaagtgagcggcgctccccggacaggagc
aagcactacgatgagcaccggcaccgcgagcacgggcacatgcacggcgacaggcaccgc
tccgctaaccacggggatcgtcgggatcgcggccgcagtccggataggaggaggcaggaa
agcagtcggcaccggacggattatgacagaggaaggatatcgcctcatcacagaagttac
gagcgaaacagggagcgggagagggagaggcatcgtcaccgtgacagcagaagatcacca
tcaccagacagatcctacaaaaaggattacaagagagcaggaagccggtctccaagcaga
gagagaaagagaacccggtgggaggaggacagagaaaggtggtctgagaaccagagctcc
agtaaagagaaaaattatactgctgtcaacaaagaatcagaagagaatgcatctgaaaaa
aatgaagaggaagatgaggaattgcttaagccagtctgggttcgctgtacccattctgaa
agctattattccaatgaccctatggatcaagtgggggactctactgtggtaggaacaagc
aagctccgggatctgtatgaaaagtttgacgaggagttaggaaagcgacaggcaaaggcc
aaagcagccaggccaccatgggagccaccaaaaaccaagctggatgaagatttagagagc
tccagtgagtcagagtgtgactccgaagatgacagcagctgttccagcagttcagattcg
gatgttattgacgtcattgcagaaattaagcgtaaaaaagcacaccctgatcgtctccac
gaggaattgtggtacaatgatcccggacagatgaatgatggacctttgtgcaaatgcagt
gctaaagcccggcgaacaggaatcagacatggcatttatcctggtgaagagcccattaaa
ccatgtcgtcccatgaccaacaatgctggaagactataccactaccgaattactgtgtca
cctcccacaaatttcttaacagacagacctactgttattgagtatgatgaccatgaatat
atctttgaagggttctccatgtttgcacatgccccgctgacaaacattcctctatgcaaa
gtaatcaggtttaacattgactatacaattcatttcattgaggagatgatgcctgagaat
ttttgtgtgagaggccttgaactgttctcttcatatctattcaaagatattttggaattg
tatgactggaatcttaaaggtccttcacttgaaaatgattctatttcctgtcccagatac
cacttcatgccgcggtttgtgagatttctcccagatggaggaaaagaagtactctcaatg
catcagattcttctctacttgttacgatgcagtaaagctctggtgcctgaagaggagatt
gctaacatgcttcagtgggaagaactggaatggcagaaatatgcagaagaatgcaaaggg
atgatcgttaccagccctggcatgaagcccagctcagttcgtattgatcaactagaccgt
gaacaattcaatcctgatgtaattactttccctattattgtacactttgggatacgacct
gctcaactcagttatgctggagatcctcaataccaaaagctgtggaagagttacgtgaag
ctgcgtcacctgctggctaatagtcccaaagtcaaacaggctgataaacagaaattatca
caaagagaggaagcactgcagaaaattcgccagaagaacacaatgagacgtgaagtgact
gtggagttgagcagccagggcttctggaaaacagggatacgctctgacgtctgccagcat
gcaatgatgcttcctgtcctcacccaccatgtccgctaccatcagtgtctgatgcacttg
gacaaattgataggctacacttttcgagataggtgcttgctgcagcttgctatgactcac
ccaagccatcatttaaattttgggatgaatccggatcacgccagaatcttatccaactgt
gggattcgacagcccaagtatggagatagaaaagttcaccatatacacatgagaaaaaaa
gggataaacaccctgataaatattatgtcccgtttgggacaggatgatccagctccttcc
aggattaaccacaatgagcgtttagaatttctgggagatgctgtggtggagttcttaaca
agtgtccacttatactacctgtttcccactctggaggaaggaggattagctacgtaccgc
actgccatcgtacagaatcagcacctggccatgctggctaagaagctggagctggaacga
ttcatgctctatgctcatggtccagacctttgcagggagtcagatctccgccatgctatg
gcaaactgctttgaagccctcataggagctgtttatctagagggaagcctagaagaagca
aaacaattatttggacgtttgctcttcaatgaaaaggacctgcgggatgtatggcttaat
tatccactacacccactccaactgcaggagtccaatactgacaggcaactcattgagacc
tctccagttcttcaaaagcttaccgagtttgaggaggcaattggagtcatctttactcac
gttcgacttctagcgcgtgcattcactctgaggacagtaggctttaaccatctgactcta
ggccacaaccagaggatggaattcctgggtgactccataatgcagttggtagccacagag
tatttattcatacatttccctgatcatcatgaagggcacttaacgctgttgagaagttct
ttggtgaacaacaggacacaggccaaggtggcagaagagctgggcatgcaagagtttgcc
atcactaacgacaagacaaaaagacctgtaactcttagaactaagactttggctgatctc
ttggaatcctttattgctgccctgtacattgataaagatttggaatacgttcacactttc
atgaatgtttgcttttttccacggctaaaggagtttattttaaatcaagattggaatgat
cctaaatctcagcttcagcagtgctgcttgactctcaggacagaaggaaaagagccggac
attcctctctacaagaccctgcagacagtgggaccttctcatgccaggacatacacagta
gctgtctacttcaaaggggaaagaataggatgtggtaaaggtccaagtattcagcaagca
gaaatgggagctgcaatggacgcacttgaaaaatataactttccccagatggcccatcag
aaacggttcattgaacggaagtacagacaagagttgaaagaattgaggtgggaaagagag
catcaagagagagagtcagaggagactgaagaagcaaggaaataa
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integrated database retrieval system
