Molothrus ater (brown-headed cowbird): 118696730
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Entry
118696730 CDS
T11569
Symbol
DDX42
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
mate
Molothrus ater (brown-headed cowbird)
Pathway
mate03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118696730 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mate03041
]
118696730 (DDX42)
Enzymes [BR:
mate01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118696730 (DDX42)
Spliceosome [BR:
mate03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
118696730 (DDX42)
Complex B
118696730 (DDX42)
Complex C
U2 SnRNP specific factors
118696730 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SBSN_GxHH_rpt
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
118696730
NCBI-ProteinID:
XP_036254904
LinkDB
All DBs
Position
27:4536999..4553175
Genome browser
AA seq
1115 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPAFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKXYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPEGPIAATAAAKGVPGFSSTGSLSSVPP
FPSAGAQGFNSTNTSASSREGGGGIVRERYNDSRNSRHGEAPRRTEGGAGGRGDGRCWWP
RGGQCWWPRGGRWWPRGGQAGGRGEGTGGRGEGAGGRFNEGQRFSEGQRFNEGQRFNDGQ
RFNDGQRFNEGQRFNDGQRFTEGQRFSEGQRFNDGQRFNDGQRFNDGQRFNDGQRFNDGQ
RFNDGQRFNEGQRFNEGQRFNEGQRFNDGQRFNDGQRFNDGQRFNEGQRFNDGQRFTEGQ
RYDGQRYTEGQRYGDGQRHGEGGGRHSDPSRHSDGRHGDVHRHGEGRHFSDSPGGNRNSE
SRNGENRKEANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtaccaagagaggctttgggtttggtggctttgcc
atcacacctggcaagaaggaggagcccaagctgtctcagcagtcccacagcgcttttggc
accgccggctcctcggcagcatttgcgaaatcggggcctcctcagctgccttccttctac
aaaattgggtcaaagagagccaattttgatgaggagaatgcgtactttgaggatgaagag
gaggattccagcaatgtggaattgccctacattcctgcagagaattcccccactcggcag
cagttccattccaaatcagcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagactggaagataaagacaaggaa
aaaaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcgtat
tttcgctacatggcagagaaccccactgctggtgtggtgcaggaggaggaggaggataac
ctggagtatgacagcgatgggaatccgattgcaccctccaaaaaaatcatcgatcctctt
ccacctattgaccattcagagattgaatacccagcatttgagaaaaatttctatgatgag
catgaggagatcaccagcctgaccccgcagcaggtggtggagctacggcacaagctgaat
ctccgggtctccggggctgctcctccaaggcctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcagattaggaaatctgagtatacccaacccactccaatacag
tgtcagggtgttccagttgcactaagtggcagagacatgattgggatagccaagactgga
agtgggaaaacagctgctttcatctggccaatgctgatccacatcatggatcagaaggag
ctggaaccaggggatggtcccattgcagtcattgtctgcccaaccagggagctctgccag
cagatccactcggagtgcaagcgctttggcacctacaacctgcgctcggtggccgtgtac
ggaggagggagcatgtgggagcaagccaaggccctgcaggagggggcagagattgtggtc
tgcacaccaggtcgtttgattgatcatgtgaaaaagaaagctacaaacctgcagagagtc
acttaccttgtgtttgatgaagctgacagaatgtttgatatggggtttgaataccaggtc
agatcaatcgcgagccacgtacgtcctgacagacagaccctcttgttcagtgccacgttc
cgtaagaagattgagaagttggctcgggatatcctgatcgacccaattcgggttgtgcaa
ggagacattggagaggcaaatgaagatgtcactcagattgtggagattttcccctctggg
cccagcaagtggaactggctgacgcggcgcctggtggagttcacgtcctcggggagcgtc
ctcctcttcgtcaccaagaaagccaacgcagaggagctggccaataacctcaagcaggag
gatcataacctggggctgctgcacggggacatggaccagagcgagaggaataaagtcatt
tcggaatttaagaaaaaggggatccccatcctggtagctactgatgtggcagctcgaggc
ttggacatcccttccatcaagactgtcatcaactacgacgtggctcgggacatcgacacc
cacacgcaccggatcggccgcaccggccgcgcgggggagaagggggtggcctacaccctg
ctgacccccaaggacagcaacttcgctggtgacctggtcaggaacctggagggtgccaac
cagcacgtctccaaagagctgctggacttggcaatgcagaacccgtggttccggaaatcc
cggtttaaaggagggaagggcaagaagctgaatattggtggtggtggcctggggtaccgt
gagcgccccgggctgggctcagaaaatactgaccgtggaaacaacaacagtgtgatgagc
aactatgaggcctacaagccatccacaggggccatgggggacaggctgacagcaatgaaa
gcagctttccagtcccagtacaagagtcactttgttgctgcaagtttaaataaccaaaag
actgggagctctgccgctggcgccagcggctggaccagcgccgggagcctgaactccgtc
ccgacgagttcagcgcagcagaacgccgccaatcccgagggccccatcgcagccacggca
gcagcgaagggagtgccgggcttcagcagcacgggcagcctgagcagcgtgccccccttc
ccgagcgccggggcacagggcttcaacagcacgaacaccagcgccagcagccgggagggc
ggcggcggcatcgtcagagaacgctacaacgacagccggaacagtcggcacggcgaggcc
ccgcggcgcacagagggcggcgctggtggccggggggacggcaggtgctggtggccgagg
ggagggcagtgctggtggccgaggggagggcgctggtggccgaggggagggcaggctggt
ggccgaggggagggcactggtggccgaggggagggtgctggtggccgcttcaatgagggc
cagcgcttcagtgagggccagcgctttaacgaaggccagcgtttcaatgatggtcagcgc
tttaacgatggtcagcgctttaatgagggccagcgctttaacgatggtcagcgcttcacc
gaaggccaacgcttcagcgaaggccaacgcttcaacgatggccagcgcttcaacgatggc
cagcgcttcaacgatggccagcgctttaacgatggccagcgctttaacgatggccagcgc
ttcaacgatggccagcgcttcaacgagggccaacgcttcaacgagggccagcgcttcaac
gagggccagcgcttcaacgatggccagcgcttcaacgatggccagcgcttcaacgatggc
caacgctttaatgagggccagcgcttcaatgatggtcagcgtttcactgagggccagcgc
tacgatggccagcgttacaccgagggccagcgctacggtgatggccagcgccacggcgaa
ggcggcggccggcacagcgacccctcccggcacagcgacggccgccacggcgatgtccat
cgccacggcgagggccggcacttcagcgactcgccgggcggcaaccgcaacagcgagagc
aggaacggagagaacaggaaggaggccaacagccgagacaacaagacagatggctttgct
gtcccagagcccccaaaacggaagaagagccggtgggacagttaa
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integrated database retrieval system
