Molothrus ater (brown-headed cowbird): 118697084
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Entry
118697084 CDS
T11569
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate03013
Nucleocytoplasmic transport
mate03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118697084 (UPF1)
03015 mRNA surveillance pathway
118697084 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mate03019
]
118697084 (UPF1)
Enzymes [BR:
mate01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118697084 (UPF1)
5.6.2.5 RNA 5'-3' helicase
118697084 (UPF1)
Messenger RNA biogenesis [BR:
mate03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118697084 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
118697084 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
118697084
NCBI-ProteinID:
XP_036255453
LinkDB
All DBs
Position
26:5631600..5655674
Genome browser
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPAQGQG
PPGAGQGAPGPLEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgcccgggcccggccaggcggggccggcccagggccagggg
ccccccggcgcggggcagggagctccgggcccgctggaagcgcaggtgaatggtcctgat
gggatcctgcagaatggagctgtggatgagaacgtggccaagaccagccagctcctggca
gagctcaacttcgaggaggacgaggaggacacctactacaccaaggacctgcctgtgcac
gcctgcagctactgtgggatccacgaccctgcctgtgtggtttactgcaacaccagcaag
aaatggttctgcaacggccgtgggaacacctctggcagccacattgtgaaccacctggtg
agagccaagtgcaaggaggtgaccctgcacaaggacgggcccctgggagagacggtcctg
gagtgctacaactgcggctgccgcaacgtcttcctgctgggcttcatcccagccaaggcc
gactccgtggtggttctgctctgcaggcagccctgtgccagccagagcagcctgaaggac
atcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctctcgtgg
ctggtgaagatcccctcggagcaggagcagctccgcgcccgccagatcacggcccagcag
atcaacaaactggaggagctctggaaggaaaatccatctgcaacccttgaggacttggaa
aaacctggtgttgatgaggaaccccagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctggtcaagcttgaggcagattatgacaagaaactgaag
gaatctcagacccaagataacatcacagtcaggtgggacctgggcttgaacaagaagaga
attgcttatttcactttgccaaagactgattcagacatgcgcctcatgcagggagatgag
atctgcctgaggtacaagggagacctggcccccctctggaaaggaattgggcacgtgatc
aaagttcctgatagttctacagattatggtgatgagatcgccatcgagctgaggagcagc
gtgggagctcccgtggaggtcacccacaacttccaggtggattttgtgtggaaatccact
tcctttgacaggatgcagagtgctctgaagacatttgcagtggacgagacctcggtgtct
gggtacatttaccacaaactgctgggccacgaggtggaagatgtcatcatcaaatgccag
ctgccaaaacgcttcacagcccagggactccctgatctcaaccactctcaggtttatgct
gtcaagaccgtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaag
acagtgacatcagccaccatcgtgtatcacctggccaggcagggcaacgggcctgtgctg
gtgtgtgcccccagcaacatcgccgtggatcagctgacagagaagatccaccagactggc
ctcaaggtggttcgcctgtgtgccaagagccgcgaggccatcgactcccccgtgtccttc
ctggccctgcacaaccagatcaggaacatggacagcatgccagagcttcagaagctgcag
cagctcaaggatgagactggagaactttcctctgctgatgagaagcgttaccgggctctg
aagcgcacggcggagcgggagctgctcatgaacgctgatgtcatctgctgcacgtgtgtg
ggagctggggaccccaggctggccaagatgcagttccgctccatcctcatcgacgagagc
acgcaggccaccgagcccgagtgcatggtgcccgtggtgctgggggcaaagcagctgatc
ctggtgggagaccactgccagctgggccctgtggtgatgtgcaagaaggcagccaaggcc
gggctgtcgcagtcgctgtttgagaggctggtggtgctgggcatccggcccatccggctg
caggtgcagtaccgcatgcaccccgcgctcagcgccttcccctccaacatcttctacgag
gggtccctgcagaacggggtcactgcagctgacagggtgaagaaaggctttgatttccag
tggccccagcctgacaagcccatgttcttctacgtgacccagggccaggaggagatcgcc
agctcaggcacctcctacctgaacaggaccgaggctgccaacgtggagaagatcaccacc
aagctgctcaaggcgggggccaagcctgaccagatcggcatcatcaccccctacgagggc
cagcgctcctacctggtgcagtacatgcagttcagcggctccctgcacaccaagctctac
caggaagtggaaattgccagtgtggacgccttccagggcagggagaaggatttcatcatc
ctgtcctgtgtgagggccaacgagcaccagggcatcggcttcctcaacgaccccaggagg
ctgaacgtggccctgaccagagccaggtacggggtgatcattgtggggaaccccaaggcc
ctgtccaagcagcccctctggaatcacctcctgaattactacaaggagcagaaggtgctg
gtggaggggcccctgaacaacctgcgcgagagcctgatgcagttcagcaaaccccgcaag
ctcgtcaacaccatcaaccctggtgcccgtttcatgaccactgccatgtatgatgcacgc
gaggccatcatccctggctctgtctacgaccgcagcagccaaggccgtccatccaacatg
tacttccagacccacgaccagattgggatgatcagtgcaggccccagccacgtcactgcc
atgaacattcccatccccttcaacctcgtcatgccccccatgccccccccgggctacttc
ggccaggccaacggccccgctgcaggccgtggggctcccaaagggaagacgggccgcggc
gggcggcagaagaatcgctttgggattcctggcaccagccagtccaacctgcccaacagc
caggccagccaggacgtggtgtcccagcccttctcgcagggccccctgacccagggctac
atctccatgagccagccctcacagatgagtcagcctgggctctcccagccggaattatcc
caggacagttaccttggtgatgagtttaaatcccagattgacgtggcgctgtcacaggac
tcaacttaccagggggaacgagcttatcaacatggtggagtgacgggactgtcacagtat
tag
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integrated database retrieval system
