Molothrus ater (brown-headed cowbird): 118697201
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Entry
118697201 CDS
T11569
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate04510
Focal adhesion
mate04512
ECM-receptor interaction
mate04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118697201
04518 Integrin signaling
118697201
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118697201
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mate00536
]
118697201
Glycosaminoglycan binding proteins [BR:
mate00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118697201
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
118697201
NCBI-ProteinID:
XP_036255629
LinkDB
All DBs
Position
30:complement(158512..176393)
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AA seq
1510 aa
AA seq
DB search
MPGHRPAPGGRRSRRPEPAATGAAPGAAPRPGLLLLLLLCLAAAAAAQDRDLPEAGSCLQ
DGHRYSDKDVWKPEPCRICVCDTGTVLCDEIMCEELRDCPSPEIPFGECCPICPTEQPSG
KPGPKGQKGEPGDIKDVVGPRGPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTP
GNPGPPGPPGPPGPPGLGGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGS
PGPQGFQGNPGEPGEPGAAGPMGPRGPPGPPGKPGDDGETGKPGKSGDRGPPGPQGARGF
PGTPGLPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGP
SGAAGARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGT
PGSPGPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGE
PGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGF
PGQDGLAGPKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGP
TGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGE
TGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGP
RGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGA
AGIAGPKGDRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGA
RGAPGERGEPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGP
TGVTGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGP
PGRAGDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGL
PGPSGEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGNPGADGPPGRDGAAGVKGD
RGETGPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGD
KGEAGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGS
NGMPGPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPGR
YMRADEAAPGLRPHDAEVDATLKALNNQIESIRSPEGSRKNPARTCRDIKLCHPDWKSGD
YWIDPNQGCTLDAIKVFCNMATGETCVYPSPGSIPRKNWWSSKAKEKKHVWFGETINGGF
HFSYGTEELAANTANIQMTFLRLLSTEGSQNVTYHCRNSVAYLDEESGSLRKALLIQGSN
DVEIRAEGNSRFTYSVLEDGCTKHTGKWGRTVIEYRSQKTSRLPIVDIAPMDIGGPEQEF
GVDLGPVCFL
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atgcccggacaccgcccggcccccggcgggcgccgctcccgccgccccgagcccgcagcc
accggcgcggcccccggagccgccccccggcccgggctcctgctcctcctcctgctctgc
ctcgccgccgccgccgccgcgcaggaccgagacctccccgaggctggcagctgcctgcag
gacgggcaccgctacagcgacaaggacgtgtggaagccggagccgtgccggatctgcgtg
tgcgacacggggacggtgctgtgcgacgagatcatgtgcgaggagctgcgggactgcccc
agccccgagatccccttcggagagtgctgccccatttgccccaccgagcagcccagcggg
aagcctggccccaagggacagaaaggtgaacccggtgatatcaaagatgtcgtaggaccc
cgaggacccccgggcccgcagggccccgcaggtgagcagggacagcgaggggaccgcggc
gagaagggcgagaagggcgcccccggcccccggggcagggatggggagcccggaacccca
ggaaaccccggcccccccgggccccccggacccccgggaccccccggcctcgggggaggg
aacttcgcggctcagatggctgggggctttgatgagaaggctggaggggctcagatgggc
gtcatgcagggacctatgggccccatgggaccccgcggcccccccggcccctccggctcc
cccggtccccaaggatttcaaggcaaccccggtgagcccggcgagcctggcgctgctggt
ccgatgggtccacggggacctccgggacctcctggcaaacccggtgacgacggcgagact
ggcaaacccgggaaatccggtgaccgcggcccccccggcccccagggcgctcgtggcttc
cccgggacccccggcctgcctggagtcaaaggccaccggggctaccccggcctggacggc
gccaagggagaggcgggagcacctggagccaagggcgagtccggctcccccggcgagaac
ggctcccccggccccatgggtccccgcgggctgcccggagagcgaggacgcccgggcccc
tcgggcgctgcgggcgctcgtggcaacgacggcctcccgggcccggccggaccgcccggt
cccgtcggccccgcaggagcccccggcttccccggcgcccccggctccaagggtgaagcg
ggtcccaccggagcgcgaggacccgagggtgcccagggcccccgcggggaatccgggacc
cccggctcgcccggccctgccggcgcccccgggaaccccgggaccgatggcatccccgga
gccaagggatcggcgggcgctccaggcatcgctggcgctccaggattccccggcccccgc
ggcccacctggaccccagggagccaccggcccgctgggccccaagggacagacgggcgag
cccggcatcgcgggattcaaaggcgagcagggacccaagggagagacgggccccgcagga
ccccagggcgcccccggaccggccggggaggaagggaagagaggagcccgtggagaaccc
ggagctgctggacctttggggccacctggagagaggggagctcctggcaaccgcggcttc
cccggacaggacgggctggccggccccaagggggccccgggcgagcgtggccccgctggc
ctggccggccccaaaggagccaccggcgaccccggacgccccggagagcccggcctgcct
ggagccaggggtctcacaggacgccctggggatgctgggccccaaggcaaagtcggcccc
acaggtgcccccggtgaggatgggcgtcccggaccccccggcccccagggggctcggggc
cagcctggtgttatgggattccctggtcccaaaggtgccaatggtgagcctggaaaagct
ggtgaaaaaggacttcctggagcaccggggctgaggggacttcctggcaaggatggagag
accggagctgccggacccccaggacctgctggcccggcaggggagaggggagagcaagga
gcccctggcccctccggcttccagggactgccagggccaccaggtccccccggcgagagt
ggcaagcccggagaccagggcgttcctggagaagccggagcccccgggcttgtgggtccc
aggggtgagcgcggcttccctggcgagcgcggctctcccggcgcccagggcctgcagggg
ccccgtggcctccccggcactcctggcaccgacggacccaagggtgccaccggccccgcc
ggccccaacggcgcccagggccccccggggctgcaggggatgcccggggagagaggagcc
gctggcatcgccggtcccaagggggacaggggagacgttggagagaaaggacctgaggga
gcccccggaaaggacggagctcgcggtctgaccggtcccatcggcccccccggccccgct
ggccccaacggcgagaagggcgagtctggcccccccggtccatctggagccgctggagcc
cgtggtgcccccggagagcgcggagagcccggagcccctggccctgccggatttgccgga
cccccgggtgctgatggccagcccggagccaagggcgagcaaggcgagcctggccagaag
ggtgacgccggagcccctgggcctcagggtccctccggggctcctggaccgcagggtccc
acaggtgtcaccggtcccaaaggagcccggggtgctcagggacccccgggagccaccgga
ttccctggagccgctggacgcgttggaccccccggccccaacggtaaccctggaccccca
ggaccccccggctccgcgggcaaggacggccccaagggcgcccggggcgacgcgggaccc
ccgggccgagcgggggacccggggctgcagggccccgccggcccccccggcgagaagggc
gagcccggcgaggacggccccgcgggtccggacgggccccccggcccccaggggctggca
ggacagcgcggcatcgtggggctcccagggcagcgtggtgagcgcggcttcccagggctg
cccggaccctcgggagagcctggaaaacagggagcacctggatctgccggtgaccgggga
ccccccgggcccgtgggaccccctgggctgactggaccagccggagagcctggacgggag
ggaaatcccggtgctgatggacccccgggcagggatggggcggcaggagtgaagggcgat
cgtggtgagactggccccgtgggcgctcccggcgctcccggcgctcccggcgctcctggc
cccgtgggacccactggaaaacagggagacaggggagagacgggtgctcagggtcccatg
ggtccctccggccccgctggcgcccgagggatgccgggtccccaggggccgcgcggtgac
aaaggcgaggcgggcgaggctggagagcgcggcctgaaggggcaccggggcttcaccggg
ctccaggggctgcctgggccccccggtccttccggagaccagggtgctgccggacctgcg
ggtccctccgggcccaggggtccccccggcccagtgggcccctcaggcaaggacggctcc
aatgggatgcccggacccatcgggccccctggaccccgcgggaggagcggcgagcctggc
ccggcgggcccccccgggaaccctggcccgcccggcccccccgggccccccggcaccggt
atcgacatgtcggcgttcgcggggctggggcagcccgagaagggccctgaccccgggcgc
tacatgcgggcggacgaggcggcgccagggctgcggccgcatgacgccgaggtggacgcc
accctcaaggccctcaacaaccagatcgagagcatccgcagccccgagggctctcgcaag
aacccggccaggacctgccgagacatcaaactctgccaccccgactggaagagcggtgat
tactggatcgaccccaaccagggctgcaccctggacgccatcaaggtcttctgcaacatg
gccacgggggagacgtgcgtgtaccccagccccggcagcatccccaggaagaactggtgg
agcagcaaggccaaggagaagaagcatgtctggttcggcgagaccatcaacggcggcttc
cacttcagctacggcaccgaggagctggcagccaacacggccaacatccagatgaccttc
ctgaggctgctgtccaccgagggctcccagaacgtcacctaccactgccgcaacagcgtg
gcctacctggacgaggagtcgggcagcctgaggaaggcgctgctcatccagggctccaac
gacgtcgagatccgcgccgagggcaacagcaggttcacctacagcgtgctggaggacggc
tgcacgaaacacacagggaagtggggcaggactgtcatcgagtaccgctcgcagaagacc
tcgcgcctgcccatcgtggacattgcacctatggacattgggggacccgagcaggagttt
ggggtcgacctcggccccgtctgcttcttgtaa
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