Molothrus ater (brown-headed cowbird): 118698032
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Entry
118698032 CDS
T11569
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mate Molothrus ater (brown-headed cowbird)
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mate03016
]
118698032 (RTCB)
Enzymes [BR:
mate01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
118698032 (RTCB)
Transfer RNA biogenesis [BR:
mate03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
118698032 (RTCB)
Prokaryotic type
tRNA splicing ligases
118698032 (RTCB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
118698032
NCBI-ProteinID:
XP_036256995
LinkDB
All DBs
Position
5:52825562..52835783
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMRVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggagctacaacgatgagctacagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggctttgtgccgaacatgcgtgtggagggcgttttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaatgcctgccgcggcggaggtgcgggt
ggcttcctgcctgctatgaaacagattgggaatgtggctgcattgcctggcattgttcac
agatcaataggccttccagatgtccattctggctatggatttgctattggcaacatggcc
gcctttgatatgagtgatcctgaagcagtggtttcaccaggtggtgtcggctttgacatc
aactgtggtgtccgcttgctgcggacaaatttggatgaaagtgacgtgcagcctgtgaaa
gaacagctcgcccaggctatgtttgaccacattcctgttggtgttggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcgctggagatgggtgtggactggtctctc
cgagagggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgcta
caggccgaccccaacaaagtctcttcaagggcaaagaaaaggggcctgcctcagctgggg
accctgggagctggaaatcattacgccgagatccaggtggtggatgagatttacaacgaa
tatgctgccaagaaaatgggcattgaccacaaagggcaagtgtgcgtgatgatccacagt
ggaagcagagggctgggccaccaggttgccacagatgcactggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaatgatcgccagctggcgtgtgccaggattgcctct
gcagagggacaggattacctgaagggaatggcagctgctggcaactatgcctgggttaac
cgctcttccatgactttcctaacacgacaggcttttgccaaagtgtttaacacaacccca
gatgaccttgacatgcacgttatctatgatgtgtctcacaacattgccaaagtggaacag
catgtagtggatggaaaggagcggactctgctggtgcacagaaagggatcaaccagggcc
ttcccccctcaccatcctcttattgctgttgattatcaactgactggacagcctgttttg
atcggtggcacaatgggcacctgcagctatgtcctcactggcacagagcaaggcatgact
gagacctttggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggacgtactggacaagctggctgacatgggtattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaacgtgactgat
gtggttaacacctgccacgaagctggcatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag
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