Molothrus ater (brown-headed cowbird): 118698521
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Entry
118698521 CDS
T11569
Symbol
THOC2
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate03013
Nucleocytoplasmic transport
mate03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118698521 (THOC2)
09122 Translation
03013 Nucleocytoplasmic transport
118698521 (THOC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mate03019
]
118698521 (THOC2)
03041 Spliceosome [BR:
mate03041
]
118698521 (THOC2)
Messenger RNA biogenesis [BR:
mate03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
118698521 (THOC2)
Spliceosome [BR:
mate03041
]
Complex C
Other components
EJC/TREX
118698521 (THOC2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118698521 (THOC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
118698521
NCBI-ProteinID:
XP_036257755
LinkDB
All DBs
Position
14:10130164..10179703
Genome browser
AA seq
1608 aa
AA seq
DB search
MAALLPAEWIKNWEKGGKSEFVQLCRALSENKNHDVGFRDIQQALYELAYHVVRGNLKHD
QASNVLGDVIEFREDMPSILADVFCILDIETSCLEEKNKRDHFTQLVLACLYLVSDTVLK
ERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLS
GNITSDLILENIKSLIGCFNLDPNRVLDIILEVYECRPEYDDFFVPLIESYMYMCEPQTL
CHILGFKFKFYQDPSGETPSSLYRVAAVLLQHNLIDLEDLYVHLLPGDNAIIEEHKREIV
EAKQIVRKLTMVVLSSEKTEEKEKEKEKEEEKTEKPPDNQKLGLLEALLKIGDWHHAQSI
MDQMPPFYSTSHKPIAIALCQLVHVTIEPLYRRVGVPKGAKGSPISSLPNKRAPKQAESF
EELRKEVFNMLCYLGPHLSHDPILFAKVVRLGKAFMKEVGTVKKFVSDRVVKFQSDGSKQ
EDKEKMETLFSCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQYRYRLYGQWKNE
TYNSHPLLVKVKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKY
DNLITPVVDSLKYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVF
RKYPIELAGLLQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLK
AEGGYFGQIRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVVFQEGGEKHLKLVGKLY
DQCHDTLVQFGGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKY
DELKKAEKGNKQQHKVHKYITSCELVMAPVHEAVISLHLPKVWDDISPQFYATFWSLTMY
DLAVPHSSYDREVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQLEHVQ
RVLQRLKLEKDNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCAHFVELVHQQKTPN
FSTLLCYDRVFSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRVIYEKECGNYPGF
LTILRATGFDGGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKI
LPWYPKVLNLGQALERRVHKICQEEKEKRPDLYALAMGYSGQLKSRKPFMIPENEFHHKD
PPARNAVPATVQNGPGGAGMPTSLTINTVRLEEGATEETADKLKEKSQGVVKVINKTVNA
TPKVTTSNGNSASNSKIIKEKDDKEKSGKEKDKEKKDKTPAATPEMKALGKDGKDKPKEE
RANKEEKAREIKEKTPKSDKEKEKVKKEEKASKEEKSKTVVTIIESKSTAEKEREKEPSR
ERDLAKEMKSKENAKGGEKVPVAGSLKSPVPRSETSESEREQKRRKVDTHSSPSHSSTVK
DNLNELKESSAKHYINHTTPTLSKSKEREVEKKDLDKSRERSREREKKDEKDRKDRKRDH
SNSDREVPQDSTKRRKEENGTTGSSKHSKSESPSDSPRLNEKEKEKNKSKSSGKEKGDSI
KAEKMEKSSSGSKKESRHDKEKTEKKEKRDSTGGKEEKKHHKSSDKHR
NT seq
4827 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgctcccggccgagtggataaagaactgggagaaaggcggcaagagcgag
tttgtgcagctgtgtcgtgctctcagtgaaaacaaaaatcatgatgtgggtttcagagat
attcagcaggctttgtatgagcttgcttaccacgttgtcagaggaaacttaaagcacgat
caagcttctaatgttcttggtgatgtcatagaattccgagaagacatgccttcaatccta
gctgatgtattctgcatattagatattgaaacaagttgtttagaagaaaaaaataagagg
gatcattttacacaactggtattggcctgtttgtatcttgtatctgacactgtcctaaag
gagcgtttagatccagagacactggagtcattgggactcatcaagcagtctcaacagttc
aatcaaaaatctgttaaaataaagacaaaactattttataagcaacagaagtttaatttg
ctaagagaagagaatgaaggttatgcaaagcttattgcagaattgggtcaagacttatct
ggaaatatcactagtgatttaatccttgaaaatatcaaatctttaataggatgtttcaat
cttgatcctaacagagttttggatatcatcctagaagtctatgagtgcaggcctgagtat
gatgatttctttgtaccactgatagagtcttacatgtacatgtgtgaacctcaaactcta
tgccatatccttgggttcaaattcaaattttatcaggatccaagtggtgagaccccttcc
tccttatacagagttgctgctgtccttttgcaacataatctcatagatttggaagatctt
tatgttcatcttctaccaggggataatgccatcattgaggaacacaagcgagagatagtg
gaagctaaacaaattgtcagaaaacttaccatggttgtcttatcatctgaaaagactgag
gaaaaggagaaagaaaaggaaaaagaggaggagaaaaccgaaaagcctcctgataatcaa
aaacttggcttattggaagccttattaaaaattggtgattggcaccatgcacaaagcatt
atggatcagatgcctccgttttactctacttcgcacaagccgatcgccatcgcgctttgc
cagctcgtccacgtgaccattgagcctctgtaccgcagagttggtgtacctaaaggagct
aaagggtcaccaatttcctctttgccaaacaagagagcaccaaaacaagcagagagcttt
gaggaattgagaaaggaagtgttcaacatgctttgttaccttggtcctcatctgtcccac
gatcctattctatttgcaaaagtagtgcgccttggaaaagcatttatgaaagaggttgga
actgtgaagaaattcgtcagtgacagagtggttaagtttcagtctgatggaagcaaacag
gaagataaagagaaaatggaaacactgttcagctgtttgttgagtattactgatcaagtc
ttgcttccatctctttccttgatggactgcaatgcatgcatgtctgaggaattatgggga
atgttcaaaacctttccataccagtatcggtaccgcctctatgggcaatggaagaatgaa
acatacaacagtcacccactgcttgtgaaagttaaagcccaaaccatagacagagccaaa
tacatcatgaagcgtttaactaaggaaaatgtgaaaccctctggaagacaaattgggaag
ctcagccacagcaatcctacaattttatttgattatattttatcacaaatacaaaaatat
gataacttgataactccggttgttgattcgctgaaatacctcacttccctgaactatgat
gtcttggcatattgtatcattgaagcattggcaaaccctgagaaggagagaatgaagcat
gatgacactacaatctcaagctggctgcagagtctggcaagtttttgtggtgccgttttc
cgaaaatacccaattgaactcgcaggcctcctgcagtatgtagccaaccagctgaaagct
ggcaaaagctttgatttgcttattttaaaagaggtagtgcagaaaatggcagggatagaa
attactgaagaaatgaccatggagcagttggaagccatgactggtggagaacagctgaaa
gctgagggtggatactttggccaaatcaggaatacaaagaaatcatctcagagattaaaa
gatgcattattggaccatgatcttgccctcccactgtgcctgcttatggctcaacagaga
aatggtgttgtctttcaagaaggaggggaaaaacatctgaagctggtgggaaaactgtat
gatcagtgccatgataccctggtacaatttggtgggtttttagcatccaatctaagcaca
gaggattacattaagcgagtgccttctattgatgttctctgtaatgagtttcacacacct
catgatgctgcatttttcctctcaagacccatgtatgcacaccacatttcatccaagtat
gatgaactaaaaaaagctgagaagggaaataaacagcagcacaaagttcacaaatacatt
acatcatgtgagttggtgatggctcctgttcacgaagctgtgatttctctgcacctccct
aaagtctgggatgacatcagccctcagttttatgctacattctggtctttaacaatgtat
gaccttgctgtgccacacagcagctatgacagagaagtcaataaacttaaagtccagatg
aaagccatagatgacaatcaggaaatgcctccaaataaaaagaagaaagaaaaagaacgt
tgcacagctctgcaggacaagcttcttgaagaggagaagaagcagttggagcatgtgcag
agggttctacagagactgaaactagagaaagataactggcttctggcaaaatctaccaaa
aatgagactatcaccaaatttttacagttgtgtatatttcctcgctgcattttttcggca
attgatgcagtttactgtgctcactttgttgaactggtgcatcagcagaaaacacccaat
ttctccacacttctctgctatgaccgagttttctctgatattatatatacagttgcaagt
tgcacagaaaatgaagccagtagatatggcaggtttttatgctgtatgctggagactgtg
accagatggcacagtgacagagtcatatatgaaaaggaatgtggcaactatccaggtttc
ctaactatattacgagcaactggatttgatggtggaaataaggctgatcagttggattat
gagaattttagacatgtggtacacaaatggcactataaattaactaaggcttctgtgcac
tgtctggaaacaggtgaatatacgcatatcagaaacatcctgattgtgctgaccaaaatc
cttccatggtatccaaaagtgctgaacctgggtcaagccttggaaagaagagtacacaag
atatgtcaggaagagaaagagaagagacctgatctatatgcattggctatgggctattct
ggacagttgaaaagtaggaagcctttcatgatacctgaaaatgaatttcaccacaaagac
ccacctgccaggaatgctgtacctgcaacagtacaaaatgggccaggtggtgctgggatg
cctacgtctctcacaataaatacagttagactggaagagggcgctactgaggagactgca
gataaactaaaggagaagtctcagggtgtggtgaaagttattaataaaactgtcaacgct
acaccgaaggtgacaacaagcaatggaaacagtgcatctaatagcaaaattattaaagag
aaagatgataaagaaaaaagcgggaaggaaaaagataaagaaaagaaagacaagactcca
gctgccactccggagatgaaggcacttgggaaagatgggaaagataaaccgaaggaagaa
cgggcaaacaaagaggagaaagcaagagagatcaaggagaaaacgccaaaatctgacaaa
gagaaggaaaaggtgaagaaagaagaaaaagcttcaaaagaagaaaagtccaagacggtt
gttaccatcattgagtcaaagtcaactgcagaaaaggagagagaaaaggagccatccaga
gaaagagatctagcaaaggaaatgaaatccaaggaaaatgctaaaggaggagaaaaggtg
ccagtagctgggtccttgaagtcacctgttccccgatcagaaacatcagaatctgaaagg
gaacaaaaacgccgcaaagttgatacacattcttctccgtcacattcctcaacagtaaag
gacaacctcaacgaactcaaggaatcttcagcaaagcactacataaaccacactactcca
acactgtccaagagtaaggagagagaagtggagaagaaagatttggacaagtcaagggag
agatccagagagagagagaagaaagatgaaaaggacaggaaagatcgaaaaagggatcat
tcaaacagtgaccgagaggtaccccaggattcaactaaacgacgcaaagaggaaaatggc
acaactggttcttcaaaacatagcaaaagtgaaagtccttctgattcccctcgcttaaat
gaaaaagagaaggagaaaaacaaatcaaagtcttcaggaaaagagaaaggtgattcaatc
aaggcagaaaagatggagaagagctcctctggtagcaaaaaggaatcaagacatgataaa
gaaaaaacagagaagaaagaaaagcgggacagtactggggggaaagaagaaaagaaacat
cataaatcttcagacaagcatagataa
DBGET
integrated database retrieval system
