Molothrus ater (brown-headed cowbird): 118699127
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Entry
118699127 CDS
T11569
Symbol
SKIC3
Name
(RefSeq) SKI3 subunit of superkiller complex protein isoform X1
KO
K12600
superkiller protein 3
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118699127 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mate03019
]
118699127 (SKIC3)
Messenger RNA biogenesis [BR:
mate03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
118699127 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_2
TPR_1
TPR_14
TPR_16
TPR_12
TPR_8
TPR_11
TPR_17
TPR_CcmH_CycH
TPR_9
ANAPC3
TPR_6
ARM_TT21_C
TPR_15
Retrotran_gag_2
BTAD
TPR_5
TolB_N
TPR_30
Fis1_TPR_C
Imm71
FlbT
TPR_20
HAT_Syf1_M
Motif
Other DBs
NCBI-GeneID:
118699127
NCBI-ProteinID:
XP_036258762
LinkDB
All DBs
Position
Z:complement(61543219..61589883)
Genome browser
AA seq
1572 aa
AA seq
DB search
MICPLYLAATMSNKEVKAALKSARDAIRNKQYKEALKHCKAVLKQEKNNYNAWVFIGLAA
AELEQPDQAKGAYKKAIELEPNQLLAWQGLANLYEKPNQTDVKGDLADVYQKLLELYESG
DKQKWCDVCNKLVELYHQEKKYLEVAETWQKLIRMKQEEGAEKAELHQLWKKMIQLLKDS
TRNQDNKTGQLLLTAFEHALQSADTVPGEDHQNLYKDFIQCLSKFPHEVGRLEKACDDMM
ALYPTMTYPVEVLCLHFVQSGTLSEKALHCFSKLLEMDASSGPGIIGFGVKCLKENKYKE
AVKSLTEGLQKTNQCPAAWYYLAEAQMKIHDHRNAVLSCNQALEALGTPEGPNLRWKNLV
FQLKAETLIKIADADAAEKAIKALEQIVDGSSDPVISALRGQAYLNKGLMDQASKVSQEL
LLSHPDLAEAHALEGFIHYSQKNYEQAEKSFLNAIERKAGTAEYHQYLGLTYWFMGDETR
KNKGKALTQFLKAAKLDSYLGSAFCYLGNYYRDIAGDKSRARGCYKKAFELDETDEESGT
AAVNLSVELGDMDTALSILNEVTEKARPGTAKWAWLHRGLYYLRTGQPSQAVADLQAALR
ADPKDSNCWESLGEAYFNRGSYSTALKSFRKASELNPGLVYSIYRAAALEQILGKYENAI
ATYQQILKKTENYVPALKGLGECYLMLARSALDNCLDRKAVDYIEQALAYFTRAVKHRPD
VSCLWKLLGDTCTSVHVISPAKVNVQVLGSLLSKNATKQVLTKNELLILGGRCYGRALKL
MSLPSIWCDLGINYYRQAEHLTAVGTDMNEISELLEKSLQCLKKAVRLDSKNHLFWNALG
VVASCSAIGNYALAQHSFIKSVQAEQINVVAWTNLGVLYLVTGNIEQAHEAFKVAQSLEP
SYLLCWIGQALIAETVGSYDTMDLFRHTTELSMHTEGAKGYAHWVCSTLQDKANRNTELY
LYNIVQMNAIPAAQVVMSKYTERNPDDASAFTMFGFLNEYLDLKQQAAYAYERAASLLKN
SEDTEKYNTAMQNYGRSLCALGRCDEAIEVYTSIPLTEFDGIVGLALAYFKKGLLEESIK
AYEKALSVAESEKDKAHILTALAIIEYKLNKVDAAKTLLFKCSLKEPSTESLKALCTLGL
VKQDATLATAALKELLKHEKGNDGIYERCLIASAVYALQGRNVAIQREVSKAIHSYPDNP
ALWSLLSRIVPLYASKKPKGGAVAGSVAHTLDVNCGKEVLLNIAVNQLVAGCHMLEDKKN
NPLKNIQKAIHVCPDNPVAWAVLMAACHAENTVVCLNNTEPKRTGLEMTLVSTVSAKTGE
SNLPRNYVRTLEDWCLCQAITSLGETGKLSEAEALCNKGLKSCPEHPALFLLLRQVQCKQ
LLQSHKELPDNILEELRKTVMSSSSSAAAWQWLAKIYESQRMMTGAEMCYRKSLQLASQQ
GSWNGKLSSLLRLAMLALEICMANVSNEHWPSLVQEATTEALKLSPSPLAALLQALLQYN
HKMGARETRRMLERIVYQPANPETIVSVARWYLLQHLYAKDDCELIDVLIENAKANGDVR
ALELNEKLSSSA
NT seq
4719 nt
NT seq
+upstream
nt +downstream
nt
atgatatgtcctttgtatttagcagccacaatgtcaaataaggaggtgaaggcagcatta
aagagtgctagagatgcaataagaaataaacagtacaaggaggccttaaaacattgcaag
gcagtcttgaagcaagaaaaaaataactacaatgcttgggtattcattggcctggcagct
gctgagttagagcagcctgatcaggccaaaggagcatacaagaaggctattgaacttgaa
ccaaaccagttactggcatggcagggattagcaaatttgtatgagaaacccaaccaaaca
gatgtcaaaggagacttagcagatgtgtaccaaaaactcttggaactttatgaaagtggt
gacaagcagaaatggtgtgatgtatgtaacaagcttgtggaactataccatcaagaaaag
aaatatttagaggtggctgaaacttggcagaaactaataaggatgaaacaggaggaaggt
gcagaaaaggcagagcttcatcagctttggaagaagatgatccagttactgaaagacagt
acaaggaaccaggataataagactgggcagttgcttttgactgcatttgaacatgcgctg
cagtctgctgacactgttcctggtgaagaccaccaaaatctttacaaagacttcatacag
tgcttgtcaaaatttcctcatgaagtcggtaggttggaaaaggcttgtgatgatatgatg
gctttgtatcctactatgacttaccctgtggaagtactttgcttgcactttgttcagtca
ggtactttgtcagaaaaggccctgcactgtttttctaaacttttggagatggatgcaagc
agtggtccaggcatcattggttttggtgtaaaatgcctcaaagaaaataaatacaaggag
gctgttaagagtcttactgaaggtttgcagaagactaaccagtgtccagcagcatggtat
tatctagcagaggcacagatgaaaatccatgaccacaggaacgctgtcctgtcctgcaat
caagctcttgaggctcttggaactcctgagggtcctaatcttcggtggaagaaccttgtc
tttcagttgaaagcagagactttgattaaaatagctgatgctgatgctgcagaaaaagcc
attaaagcacttgagcagattgtagatggaagcagtgatccagtgatttcagctctcagg
ggtcaggcttatctaaacaagggtttaatggatcaggcttcaaaggtttcacaagagctt
ctcctgtcccaccctgatctggctgaggcccatgctctagagggtttcatccattattcc
caaaagaactatgagcaggcagaaaaaagttttctaaatgctattgaaagaaaggctgga
actgcagagtatcatcagtacctggggcttacatactggttcatgggtgatgagacaaga
aaaaacaaaggaaaagcactcactcagttcttgaaggctgcaaaattggacagctacttg
ggaagtgccttttgttatctaggtaactactacagagacattgctggagacaaaagcaga
gctcgtggttgctataaaaaggcttttgaactggatgagacagatgaggaatctggaaca
gcagctgtcaatttaagtgtggaacttggagacatggacactgctctgtcaatccttaat
gaggtaactgaaaaagcaagacctggtacagcaaaatgggcctggcttcatcgtggactt
tactacttgagaactggtcagccgtcacaagcagttgctgatttgcaggcagctctcagg
gctgatccaaaggattccaactgctgggagtctctaggggaggcttacttcaacagaggt
agctactcaacagctctgaaatccttcaggaaagcaagtgagctgaacccagggcttgtg
tacagcatttacagagctgcagcacttgagcaaattctaggcaaatacgaaaatgctata
gctacctatcaacagatattaaagaagacagaaaactatgtgcctgcactgaaaggactt
ggtgagtgttatctcatgctggcaagatcagcccttgataactgtttggataggaaggct
gtggattacatagagcaggcccttgcatattttacgagggcagtaaagcaccgtcctgat
gtatcttgcctctggaaactgttaggagatacctgtactagtgtacatgttatttcacca
gccaaagtgaatgttcaagtactaggatctcttctgagtaaaaatgcaaccaaacaggtg
ctgacgaaaaatgagcttctcatactgggaggaaggtgttatggcagagctttaaaactg
atgtctttgccgagcatatggtgtgatcttggaataaattattatcgccaagcggagcac
ctcacagcagtgggcacggacatgaatgagatcagtgaactgttagagaagtctttgcag
tgtctcaaaaaagctgtaagacttgacagcaaaaatcatcttttttggaatgcacttggt
gtagttgcttcttgtagtgctattgggaattatgctcttgcacaacattcgttcatcaaa
tctgttcaagctgagcaaattaatgttgttgcctggaccaacttgggggttttgtatctg
gtaactggaaacattgagcaagctcatgaagccttcaaggtagcccagtctctggaacct
tcttacctcttgtgttggattggacaggctcttattgcagagactgtaggcagctatgat
accatggatctcttcaggcacacaactgaactcagtatgcatactgagggagcaaaaggc
tatgcccactgggtatgttcaacgctgcaggataaagccaacagaaacactgaactgtat
ctgtacaacattgttcaaatgaatgctataccagcagcccaagtggtcatgagcaaatat
acagaaagaaatccagatgatgcttctgctttcacaatgtttgggtttttgaatgagtat
ctggatctaaaacagcaggcagcctatgcctatgagagggcagcttcactgctgaaaaac
tcagaggatactgagaaatacaatacagcaatgcaaaactatggcaggtcactatgtgct
cttgggcggtgtgatgaggccattgaagtttacacatcaatacccctaacagagtttgat
ggcattgtggggctagcgttagcttacttcaagaaaggactcttagaagaaagtatcaaa
gcctatgaaaaagccttgtctgttgctgagtctgaaaaagataaagcacatatcctgact
gccttggcaataatagaatataaactgaacaaagtggatgctgcaaagacactgctgttt
aaatgctcattaaaggaacctagtacggaaagtctgaaggctttatgcacactgggattg
gtaaagcaggatgcaacacttgcaacagcagccctaaaagaattactgaagcatgaaaaa
gggaatgatgggatttatgagaggtgtctcattgcatctgctgtttatgcattgcaaggt
agaaatgtagcaatccagagggaagtctccaaagcaatacacagttaccctgataatcct
gccctttggtctcttctgtctcgaatagttccactgtatgcatcaaaaaagccaaaagga
ggagctgtggcaggaagtgttgcacatacacttgatgtaaactgtggaaaggaagtcctg
ctgaatattgcagttaatcagttggtagcaggatgtcacatgttagaagataagaaaaac
aatcctctgaaaaatattcagaaggccatccatgtctgtccagataatcctgttgcttgg
gcagtgctaatggcagcctgtcatgctgaaaacactgttgtctgtctaaacaacactgaa
ccaaaacgaacaggcctagagatgacacttgtgtctacagtttcagccaaaactggagaa
agtaatcttccacgtaattatgtccgtactcttgaagactggtgtctgtgtcaagctatt
accagtctaggggagactggtaaactgtcagaagctgaagctctttgtaacaagggttta
aaaagctgccctgagcacccagctctatttttgcttttgagacaagttcagtgtaagcag
ctgttgcagtctcacaaagaacttccagacaacatcctggaggaacttcgcaagacagtc
atgtccagttcatcctcagctgcagcctggcaatggctggcgaaaatatatgagtctcag
agaatgatgactggagcagaaatgtgttacagaaagagtctgcagttggcatcacagcag
ggcagctggaacgggaagttatccagtctgctcaggctagctatgctcgcactggaaatc
tgcatggctaatgtctcaaatgaacactggccatccttggttcaggaggcaacgactgaa
gctttgaaactttctccttcccctttggcagctctgcttcaagccctgctacaatataat
cacaaaatgggagcaagggaaactcggcgaatgttggagagaattgtttaccagccagcc
aatccagaaaccatagtgtcagtggcacgctggtacctcctgcaacatctgtatgccaaa
gatgattgtgaattaatagatgtgcttatagaaaatgccaaagctaatggagatgttaga
gctctggaactaaatgagaaattatcatcaagtgcctag
DBGET
integrated database retrieval system
