Molothrus ater (brown-headed cowbird): 118699999
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Entry
118699999 CDS
T11569
Symbol
HMGB1
Name
(RefSeq) high mobility group protein B1
KO
K10802
high mobility group protein B1
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate03410
Base excision repair
mate04140
Autophagy - animal
mate04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
118699999 (HMGB1)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118699999 (HMGB1)
09143 Cell growth and death
04217 Necroptosis
118699999 (HMGB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mate03036
]
118699999 (HMGB1)
03400 DNA repair and recombination proteins [BR:
mate03400
]
118699999 (HMGB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mate04147
]
118699999 (HMGB1)
Chromosome and associated proteins [BR:
mate03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
118699999 (HMGB1)
DNA repair and recombination proteins [BR:
mate03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
118699999 (HMGB1)
MMR (mismatch excision repair)
Other MMR factors
118699999 (HMGB1)
Exosome [BR:
mate04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
118699999 (HMGB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
RNA_pol_3_Rpc31
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
118699999
NCBI-ProteinID:
XP_036260171
LinkDB
All DBs
Position
2:68817162..68825803
Genome browser
AA seq
215 aa
AA seq
DB search
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKF
EDMAKADKLRYEKEMKNYVPPKGETKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKVDGGKKVVAKAEK
SKKKKEEEEDEDEDEEDEDDEEEEEEEDEDDDDDE
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaggtgatcctaagaagccgagaggtaaaatgtcttcatacgccttctttgtg
caaacctgtcgggaggagcacaagaagaaacatccagatgcgtcagtgaacttctcagag
ttctcaaaaaaatgctcagaacgatggaagactatgtcttctaaggagaaagggaagttt
gaagatatggcaaaggctgacaagcttcgttatgaaaaagaaatgaaaaactatgtacca
cctaagggggaaacaaaaaagaagttcaaggatccaaatgcaccgaagaggcctccttcg
gcttttttcttgttttgctctgagtttcgtccaaaaatcaaaggagaacatcctggtctg
tccattggagatgttgcgaagaaactgggagagatgtggaacaacaccgctgcagacgat
aaacagccttacgaaaagaaggctgctaagctgaaggagaaatatgaaaaggatatcgct
gcataccgggccaaagggaaggttgatggaggcaagaaagtagttgccaaggctgagaag
agcaagaagaagaaggaagaggaggaggatgaggacgaagatgaagaggatgaagatgat
gaagaggaggaagaagaggaggatgaagatgatgatgatgatgaataa
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