KEGG   Molothrus ater (brown-headed cowbird): 118700524
Entry
118700524         CDS       T11569                                 
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
mate  Molothrus ater (brown-headed cowbird)
Pathway
mate04140  Autophagy - animal
mate04142  Lysosome biogenesis
mate04148  Efferocytosis
mate05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:mate00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    118700524 (VPS41)
   04140 Autophagy - animal
    118700524 (VPS41)
   04148 Efferocytosis
    118700524 (VPS41)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    118700524 (VPS41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mate04131]
    118700524 (VPS41)
Membrane trafficking [BR:mate04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    118700524 (VPS41)
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin VPS18_solenoid_2nd zf_RING_Vps8_fungal WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 Beta-prop_HPS5 Vps39_1 zf_RING_Vps8 ANAPC4_WD40 TPR_PEP5_VPS11 Beta-prop_THOC3 WD40_WDHD1_1st TPR_YpiA Frtz Beta-prop_IFT122_1st Beta-prop_WDR3_2nd zf-RING_5 Beta-prop_RIG_2nd TPR_INTS8 Beta-prop_IFT140_2nd TPR_GEMI5 RING_Ste5 CFAP251_N zf-RING_11 zf-RING_2
Other DBs
NCBI-GeneID: 118700524
NCBI-ProteinID: XP_036260951
LinkDB
Position
1:54752548..54862124
AA seq 854 aa
MAEAGEKETRSYEESTDESEEDESEEEPKLKYERLSNGVTEILQKDAASCMTVHEKFLAL
GTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSAEEFH
ETFDCPIKIVAVHPQFVRSHFKQFVTGGKKLLLYERGWMNRWKPSVLHEGEGNIRNIKWR
GHLIAWANNMGVKILDMISKQRITNVPRDDISLRPDMYPCSLCWKDNLTLIIGWGNSVKI
CSVKERHASEMRDLPNRYVEIVFQFDTEFYVSGLAPLCDQLVILSYVKEISEKTEVECCA
RPRLDIVQPLPESCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIISPRDVVVAKER
DQDDHIDWLLEKKKYEEALMAAEISQKTIKKHKILDIGLAYINHLMEKGEYDLAARKCQK
ILGKNTELWEFEVYKFKEIGQLKAISRYLPRRDPVLKPLIYEMVLHEFLESDYEGFATLI
KEWPGDLYNNTIIVQAVVDHLKKDPQNRTLLRTLAELYTYDQRYGRALEIYLTLRHKDVF
QLIHKHNLFSSIRDKIVLLMDFDSEKAVDMFLDNEDKISIDRVVEELENRPELQHVYLHK
LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL
SRMGNSRSALKMIMEELQDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH
VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM
KGVLVDEENICESCLSPILPSDASKSFSVVVFHCRHMFHRECLPVSNTVSSVQFCNICSA
KHRGPGSAVLEMKK
NT seq 2565 nt   +upstreamnt  +downstreamnt
atggcggaagccggggagaaggaaaccaggtcttatgaggaatcaacagatgaatctgag
gaagatgagagtgaagaagaacctaagctcaagtatgaacggctttctaatggagtgact
gaaattctccagaaggatgcagccagctgcatgacagtgcatgaaaagtttttggcactg
ggaacacattatggcaaagtttatttacttgatgtccaggggaacatcacacagaagttt
gatgttagcccagtgaagataaatcagatcagcctggatgaaagtggagagcacatgggt
gtttgctcagaagatgggaaggtacaagtgtttggattatattcagcagaagagtttcat
gaaacatttgactgtcctattaaaattgttgctgttcatcctcagtttgtaagatcccac
ttcaagcaatttgtaacaggaggaaaaaagttgctgttatatgaaagaggttggatgaat
agatggaagccttcagttttacatgaaggggaaggaaatataagaaatataaaatggaga
gggcacttaattgcttgggctaataatatgggcgtgaagatacttgacatgatctccaag
caaagaattaccaatgtgcctcgagatgacataagccttcgcccagatatgtatccctgc
agcctttgctggaaggataatttaactctgattattggctggggaaattcagtaaagatt
tgctcagtaaaagaacggcatgccagtgaaatgcgtgacctaccaaaccgctacgtggaa
atagttttccaatttgacaccgaattctacgtcagtggacttgcacctctctgtgaccag
cttgttatactttcatatgtaaaggagatctccgaaaaaacggaagtggagtgttgtgca
aggcctagacttgatattgtacaacccctgcctgagtcctgtgaagagatctcttctgat
gcactaacagtacgaggatttcaggaaaatgaatgtcgtgattatcatttagagtattcg
gaaggtgaatcgcttttttatatcatcagcccaagagatgtggttgtggccaaagagcgg
gaccaagatgatcacattgactggcttcttgaaaagaagaaatacgaagaagctttgatg
gcagctgagatcagtcaaaaaaccataaaaaagcacaagattttggatattggcttagcc
tatataaatcacctgatggagaaaggagagtacgacctggctgctcgaaagtgccagaaa
atccttggcaaaaacacagaactctgggaatttgaagtttacaagtttaaagaaataggt
cagcttaaagcaattagtcgttacttgccaagacgagatccagttttgaagcctctgatc
tatgaaatggtcctgcatgaatttttggaaagtgactatgaggggtttgcaacgctaata
aaagaatggcctggagatctgtacaacaacacaatcatagttcaagctgtagtggatcac
ctgaagaaagatccacagaacaggactttgctacgaacacttgcagaattgtacacttac
gatcagcgctatggcagagccctagaaatctacctaactctaaggcacaaagatgtcttc
cagttaatccacaagcacaatctcttcagttctatcagagacaaaattgttctgctcatg
gatttcgattcagagaaagcagtagacatgtttttggataatgaagataaaatttctatt
gacagagttgttgaagagttagaaaacaggcctgagttacagcatgtgtatttacacaag
cttttcaaaagagaccaccataaaggccaacgatatcatgagaaacagatcagtctttat
gctgaatatgatcgaccaaacttacttccatttctcagagacagcacacactgcccactg
gagaaggctcttgagatctgccagcagaggaactttgtagaggagacagtctatcttctg
agcagaatgggtaatagccgcagtgccttgaagatgataatggaagaattgcaagatgta
gataaagctattgaatttgccaaggaacaagatgatggagaactttgggaagatctcatt
ttatattctattgacaaaccaccttttattactggtttgttgaacaatattggaacccat
gttgatcctattcttttgatccaccgcattaaggaaggcatggagattcctaatttgaga
gactcactagtgaaaattcttcaggactacaacttgcagatcttgctgcgggaaggatgc
aaaaagatacttgttgctgattctctttctttattgaagaaaatgcatcgaactcagatg
aagggtgttctagtggatgaggagaatatctgtgaatcatgtctgtctccaatattacct
tcagatgcatccaagtccttcagtgtggtagtgttccactgcagacacatgtttcacaga
gagtgcctacctgtatctaacacagtatcttctgtccagttctgcaatatatgcagtgcc
aaacacagggggccaggaagtgcagtcctggagatgaagaaatag

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