Molothrus ater (brown-headed cowbird): 118701488
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Entry
118701488 CDS
T11569
Symbol
VPS50
Name
(RefSeq) LOW QUALITY PROTEIN: syndetin
KO
K23288
syndetin
Organism
mate Molothrus ater (brown-headed cowbird)
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mate04131
]
118701488 (VPS50)
Membrane trafficking [BR:
mate04131
]
Protein recycling
Others
EARP complex
118701488 (VPS50)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
118701488
NCBI-ProteinID:
XP_036262014
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Position
1:24253733..24334459
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AA seq
967 aa
AA seq
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MQKIKSLMTRQGLRSPQESVNDLSPIENLRIPTKEELRELHEEPPDPQAQQEIINSIEEV
YFSNDSFDIVKYELERLPPVLSLQELEEYRDKLKQQQAAVSKKVADLILEKQPAYVEELE
RVTSLQSGLQLAAVICTNGRRHLNIAKEGFTQTSLGLLANQRKRQLLIGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDINHYTKVQQAYKLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
DTKFQKLQYKDLCTHITSDSYIPCLADLCKALWEVMLSYYRTMQWHENHDQDEAAVVSSV
SDGNNVIGTEENSFDRNYVKKKLEHGLSRIWQDVQLKVKTYLLGTDLSNFKYDDFIFVLD
VISRLMQVGEEFCGSKSEVLQEXIRKQSVNYFKTYHRTRLEELRMFLENETWELCPVKSS
FSILQLHEFKFMEQSRSPSVSPSKQPASAASSAVTLFEQYCAGGNPFEIQADSKDDETED
VLASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDAPIKSVSRETLRSRKRSDY
NLNKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAVYTFFGRN
DMFESTGLGLSSSRLRTTLNRIQESLIDLEVSADPSGTLTAAEERKEKVPSPHLSHLVVL
TSGNSLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAAKKPFLQQFYSQTVSTASELR
KPVYWIVAAKAIDYEQMLLLMANVKWDVKEIMSQHNVYVDALLKEFEEFNRRLNDVSKRV
RIPLPVSNILWEHCIRLANRTLVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPI
PDKEFVETYIKAYYLTENDMESWIKEHREYSTKQLTNLVNICLGTYINKKARQKLLATID
DTDRPKR
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtcgctgatgacccgccagggtctaagaagtcctcaggagagtgtt
aatgacctcagtcctattgaaaacttacggattcctacaaaggaggagctcagagaacta
catgaagaaccacctgatcctcaggcacaacaggaaataattaacagcattgaagaagtt
tatttttccaatgactcctttgatattgtgaagtatgagttagagaggcttcctccagta
cttagtcttcaagaactggaagagtacagagacaaactaaaacaacagcaagctgctgta
tctaagaaagttgcagatttaatccttgaaaaacagcctgcatatgttgaggagcttgaa
cgtgttacatcattgcagagtggccttcagctggcagcagttatttgcacaaatggaaga
agacacctgaatatagcaaaggaagggttcacacaaactagtttggggctccttgcaaat
cagaggaaacgacagttgcttattggactgctaaaatctctgagaacaataaaaacactg
caaagaactgatgtgcgtttgagtgagatgttggaggaggaggattatccaggagctatt
caactatgcttggaatgccagaaagctgccagcactttcaaacactacagttgtataagt
gagttaaattcaaaactgcaagacaccttggaacaaatagaggaacaattggatgtagcg
ctttccaaaatatgcaagaattttgatatcaatcattatacaaaggttcagcaagcttac
aagctgcttggaaaaacacagacagcaatggaccagttacatatgcacttcacccaagcc
attcacaacactgtgtttcaagtagtccttgggtatgtggagctttgtgcaggaaacaca
gacaccaagttccagaagttacagtacaaagacctctgtacacacatcacatcagacagc
tacattccatgccttgctgatctctgcaaagccctctgggaagtcatgctcagttactac
cgaacgatgcagtggcatgagaaccatgaccaagatgaggcagcagttgtgtcttctgtt
tcagatggcaacaatgtgattggaactgaagagaacagttttgaccgcaactatgtaaaa
aagaaattggagcatgggctttcacgaatatggcaggatgttcaactgaaagtgaaaaca
tatcttctgggaacagatctgtctaacttcaaatacgatgacttcatatttgtacttgat
gttatcagcaggctgatgcaggttggagaagaattttgtggcagtaagtctgaagttttg
caagtcatcagaaaacaaagtgttaactatttcaaaacataccacagaacccgtcttgag
gaacttagaatgtttttggagaatgagacctgggaactttgtcctgttaaatcaagcttt
agtattttgcagcttcatgaatttaagttcatggagcagtcgcgttccccgtcggtgtcg
ccgagtaagcagccagcctctgcagcttcatcagcggtgacgctgttcgagcagtactgc
gccgggggaaaccccttcgaaattcaggccgacagcaaggatgatgagacagaagatgtg
ttagcttccaatgggtatgaatcagatgaacaagaaaaaagtgcatatcaagagtatgac
agtgacagtgatgtacctgaagagttgaaaagagattatgtggatgagcagacaggagat
gccccaataaaaagtgtttctcgagaaactctgaggagcagaaagagatcagattataac
ctcaataaagtgaatgcacctattctaaccaacactacactgaatgtaataaggcttgtt
gggaaatatatgcagatgatgaatattctgaagcctattgcatttgatgtgatccacttc
atgtcccagctctttgattactatctgtatgcagtctatacattttttggccgaaatgac
atgtttgaatcaacaggactgggcctcagcagcagcagattacgcaccacactgaacaga
atccaggagagtctgattgatctggaggtgtctgctgatccttcagggactctcactgct
gctgaagagagaaaagagaaggtgccaagcccacatctcagtcatcttgtagttttgaca
tctggcaattcgctgtatggcttggcagagagagtggtggccacggaatccttggtattt
ctggctgagcagtttgaatttcttcagcctcatcttgatgcagtgatgccagctgccaag
aagccttttcttcagcagttctattctcagacagtgtcaactgccagtgaactacgtaaa
ccagtttattggattgttgctgctaaagccattgattatgaacaaatgcttcttctcatg
gctaatgtgaaatgggatgtgaaggaaatcatgtcacagcacaatgtatatgtagatgct
cttttaaaggaatttgaagaatttaacaggaggttgaatgatgtgtctaagagagtccgt
attccattgccagtctccaacatcctttgggagcactgcatacgcttggccaatagaact
cttgtggaaggttatgccaatgtgaagaaatgcagcaatgaaggacgtgccttgatgcaa
ctggattttcaacagttcttaatgaaactagaaaagttaacagacattaggcctattcca
gataaagaatttgtggaaacctacattaaagcatactacctgacagaaaatgacatggaa
tcctggataaaagaacatagggaatattccactaagcagctgaccaatctggtgaatatt
tgtctgggcacctacatcaacaaaaaggcaagacagaagctgttagctaccattgatgac
acagacaggcctaagagataa
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