Molothrus ater (brown-headed cowbird): 118701920
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Entry
118701920 CDS
T11569
Name
(RefSeq) transcription factor SOX-17-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
mate Molothrus ater (brown-headed cowbird)
Pathway
mate04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
mate00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
118701920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mate03000
]
118701920
Transcription factors [BR:
mate03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118701920
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
K_channel_TID
HTH_24
Motif
Other DBs
NCBI-GeneID:
118701920
NCBI-ProteinID:
XP_036262789
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All DBs
Position
1:113863501..113865377
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AA seq
415 aa
AA seq
DB search
MSSPDAGYASSDDQVQGRCSLPIMMPAMCPWAPEALSPLGEAKAKGGAAASGPSGGRSKG
EARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALSLSEKRPFVEEAERL
RVQHMQDHPNYKYRPRRRKQVKRLKRVESGFLQHGLAEAAAAAAGPGLGSEVSGGGGGGR
MCVEGLGLAYGEQGYAAAGAGHYRDCPPLGAAFDGYGLPTPDPSPLDAAESEASFFAAGL
QEECALVPYGYGPHPAAAEYPAAAAAAAAAAASESPSGASLRRHLAPGEALGAGGSLQGL
LGCPAPLHAYYGQCQPPGAGRGPPLPPGAVGQPSPPPESAPCREQLEQLRPEELLGEVDR
TEFEQYLRFACKPELGLPYGGHEAAALSAPEAAAPISSAVSDASSAVYYCGYPDL
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccccgatgcgggctacgccagcagcgacgaccaggtgcaggggcggtgctcg
ctgcccatcatgatgccggccatgtgcccgtgggcgccagaggcgctgagcccgctgggc
gaggcgaaggcgaagggcggcgcggcggcgtcggggccgtcgggcggccggagcaagggc
gaagcgcggatccggcgtcccatgaacgccttcatggtgtgggcgaaggacgagcgcaag
cggctggcgcagcagaacccggacctgcacaacgccgagctcagcaagatgctgggtaaa
tcgtggaaggcgctgtcgctgtcggagaagcgtccgttcgtggaggaggcggagcggctg
cgggtgcagcacatgcaggaccacccgaactacaagtaccggccgcggcggcggaagcag
gtgaagcgcctgaagcgggtggagagcggcttcctgcagcacggcctggcagaggcggcg
gcggcggcggcggggcccgggctgggcagcgaggtgtccggcggcggcggcggcggcagg
atgtgcgtggagggcctgggactggcgtacggcgagcagggctacgcggcggcgggcgcg
ggccactaccgggactgtccgccgctgggcgccgcgttcgacggctacggcctgccgacg
ccggacccgtcgccgctggacgcggcggagagcgaggcgtccttcttcgcggcggggctg
caggaggagtgcgcgctggtgccctacggctacggcccgcacccggcggccgccgagtac
ccggcggcagcagcagcagcagcagcagcagcggcgtccgagagcccgtcgggcgcgtcg
ctgcggcggcacctggcgcccggggaggcgctgggcgcgggcgggtcgctgcaggggctg
ctgggctgcccggcgccgctgcacgcctactacgggcagtgccagccgccgggagcgggg
cgcggcccgccgctgccgccgggcgccgtggggcagccgtcgccgccgccggagtcggcg
ccgtgccgggagcagctggagcagctgcggccggaggagctgctgggcgaggtggaccgc
acggagttcgagcagtacctgcgcttcgcctgcaagcccgagctggggctgccctacggc
ggccacgaggcggccgcgctgtcggcgcccgaggccgcggctcccatctcgtcggccgtg
tcggacgccagcagcgccgtctactactgcggctaccccgacttgtga
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