Marivita sp. tig00000067: ACMVPR_03345
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Entry
ACMVPR_03345 CDS
T11113
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
matg Marivita sp. tig00000067
Pathway
matg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
matg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACMVPR_03345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
matg03019
]
ACMVPR_03345
03009 Ribosome biogenesis [BR:
matg03009
]
ACMVPR_03345
Enzymes [BR:
matg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACMVPR_03345
Messenger RNA biogenesis [BR:
matg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACMVPR_03345
Ribosome biogenesis [BR:
matg03009
]
Prokaryotic type
rRNA processing factors
ACMVPR_03345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
XOY46818
LinkDB
All DBs
Position
670496..673321
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AA seq
941 aa
AA seq
DB search
MPKKMLIDATHAEETRVVVVDGTKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAESQARREDEDEKPKSRCGRGRNR
SRAAKADSDDAVATKDVSDEISGMETIDLSDEGDDDTEGLSPMETVAETPVEEPEYIETS
EPAALHDEDDDEDDLSQPADRDENIESVADDDTEEDIRPRRKPRPKRYKIQEVIKVRQIL
LVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAPDRKKLKEIANEID
VPKGAGLIIRTAGAKRTKTEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIR
DLYNRDIDEVLVEGERGYRIAKDFMKMIMPSHAKNVKHYADQMPLFARHQVESYLSGMFN
PTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLA
GLIVIDFIDMDERKNNAAVEKRIKDKLKNDRARIQVGRISGFGLMEMSRQRLRPGMIEAT
TQPCPACHGTGLIRSDDNMALQVLRQIEEEGVRRRSREVLVRCPVSIANFLMNQKREHVA
QIELRYGMSVRIEGDVHLVSPDFTIEKFKTATRVVPEAPAHVVSVNLSLMDQVDEDAAED
EDEDEGEDQVDAVTETVEEDESKPKKRRRRSRRGGRGRNRNRDRQDDGENGAEAGELDET
SDGEGAVDAVEADAAYDASSDADAADETPAKPKRTRSRSRKSGSTAKADGAEAKTAKAEV
EDAPVVDAEAVDAAPAEEDAPKKKPRSRSRKKAEPKADADGAVEAAEETVEAVAETADAP
KAKKAPARRSRAKKAPEPEAPAAAVIPAEEIAPVPELAAPETVEAEATAPDVTEEPAPVA
ETVSEEPPAASPEPETVGADAESASDDSNKKKRRGWWSLGR
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagaaaatgcttatcgatgccacccacgcggaggaaacccgcgttgtggtggtc
gacggaaccaaggttgaggaatttgactttgaatccgaaaacaaacgccagcttgctggc
aacatctacctcgcaaaagtaacacgggtcgaaccgtcgcttcaggcggcgttcgtggat
tacggtggcaatcgccacggtttcctcgcgttttcggaaatccaccccgactactatcag
atcccggtcgcggaccgcgaagcgctgatggaagaagagcgtgcctatgccgaaagccag
gcgcgccgtgaggacgaggacgaaaagccgaaatcacgttgtggtcggggccgcaatcgg
tcgcgtgccgccaaggccgacagcgatgacgcggtcgcaaccaaagacgtgtcggacgaa
atctccgggatggagaccatcgacctttcggacgagggcgacgacgacaccgaaggcctg
tcgccgatggaaaccgtcgcggaaactccggtcgaagaacccgagtatatcgagacatca
gagcccgcggcgctgcatgacgaggatgatgacgaggatgatctgtcccagccggcggat
cgcgatgaaaacatcgaatccgtcgccgatgacgacaccgaggaagatatccgcccgcgc
cgcaagccgcgccccaagcgctacaagattcaggaagtcatcaaagtgcgccagatcctt
ctggtgcaggtcgtcaaggaagaacgcggcaacaagggcgcggcgctgaccacctatctg
tcgctggcaggtcggtactgtgtgctcatgccgaacacggcgcggggcggtggcatcagc
cgcaagatcaccaacgcgccggaccgaaagaagctcaaggaaatcgccaacgagatcgac
gtgcccaagggcgcgggtctcatcatccggacggcaggcgccaagcgcaccaagaccgag
atcaagcgcgactacgaatacctgcagcgtctgtgggagcagatccgcgagttgacgctg
aaatctatcgcgccggcgaagatttacgaggaaggcgacctgatcaaacggtcgatccgc
gatctctataaccgcgacatcgacgaggttctggtcgagggcgaacgcggttatcgcatc
gccaaggacttcatgaagatgatcatgccgtcccatgccaagaacgtgaaacattacgcc
gaccagatgccgctctttgcgcgtcatcaggtggagtcctacctgtcgggcatgttcaac
ccgaccgtgcagctcaaatccggcggctatatcgtgatcggtgtgaccgaagcgcttgtg
gccatcgacgtgaactcgggccgcgccaccaaggaaggctcgatcgaggaaacggcgctc
aagaccaaccttgaggccgctgaagaagtggcgcgtcagttgcgcctgcgtgaccttgct
ggcctcatcgtgatcgacttcatcgacatggacgagcgcaagaacaacgccgccgtcgag
aagcgcatcaaggacaagctcaagaacgatcgtgcgcgcattcaggttgggcgcatctcg
ggttttggcctgatggaaatgtcccgccagcgtctgcgtcccggcatgatcgaggcgacg
acccagccgtgcccggcctgccatggtacagggttgatccggtcggatgacaacatggcg
ctgcaggtgctgcgtcagatcgaggaagaaggcgtgcgccgccggtcacgcgaggttctc
gtacgttgcccggtttccatcgcgaacttcctgatgaaccagaaacgcgaacatgtcgcc
cagatcgagctgcggtatggcatgtcggtgcggattgaaggcgatgtgcatctggtcagc
ccggacttcaccatcgagaagttcaagacagcgacccgcgtggtgcctgaagcccccgcc
catgtcgtttccgtcaacttgtccctgatggatcaggtcgatgaggatgcggcggaagac
gaggatgaggacgagggcgaggatcaggtcgacgcggtgactgagaccgtcgaagaagac
gagtccaagccgaagaagcgccgccgccggtcgcgccgtggcggacgtggtcgcaaccgc
aaccgcgatcgtcaggacgacggcgagaacggggccgaggctggcgagttggacgagacc
tccgacggcgaaggcgctgtagacgcggttgaagccgacgcggcatacgatgcctcgtca
gatgctgatgccgcagacgagactccggccaaacccaagcggacccgcagccggtcccgc
aagtcgggctccaccgccaaggcagacggggcagaggccaagacggccaaggcagaggtg
gaagatgcacctgtggtcgacgctgaggcagtcgacgctgctcctgcagaagaggatgcg
cccaagaaaaagccgcgcagccggtcccgcaagaaggcagagcccaaggcggatgctgac
ggtgctgttgaggccgccgaagagaccgtagaggcagttgccgaaacggcagacgcaccc
aaggcgaagaaagctccggcgcgccgttcacgggcaaagaaagctcctgaacccgaggct
cctgccgcggccgtgatccctgccgaagagatcgcccccgtgccggaattggcggcaccg
gagacggtcgaggccgaagcaactgcgccagacgtcaccgaggaaccggctccggttgcc
gagaccgtctcggaagaacctccggcggcgtcgcctgaaccggaaacggtcggggcagat
gccgaaagtgcgtccgacgacagcaacaagaaaaagcgtcgtggttggtggtctcttggc
cgctga
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