Marivita sp. tig00000067: ACMVPR_04360
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Entry
ACMVPR_04360 CDS
T11113
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
matg Marivita sp. tig00000067
Pathway
matg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
matg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACMVPR_04360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
matg03019
]
ACMVPR_04360
Messenger RNA biogenesis [BR:
matg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACMVPR_04360
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
XOY47010
LinkDB
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Position
878380..880047
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AA seq
555 aa
AA seq
DB search
MSGERIIYLPLGGAGEIGMNAYVYGYGKPGKERLILVDLGVTFPDMDGTPGVDLILPDIA
WLKERRNQLEAIFITHAHEDHVGAIGHFWEELGAPIYARAFTAHIARLKMEDAGQSPETV
RTVSPWPETVEAGPFKVGFVPISHSIPESSGLVIDTPQGRIVHSGDFKIDETPVVGEAFD
RALWEEIGKPGVKALICDSTNVFSGHAGRSEATVGPEIETLVRDATGMVVATTFASNVAR
VKTLAEAAVRAGRSVCLLGRAMRRMIEASIKTGVLADFPTVVSPEEATQIPRENLMLIVT
GSQGERRAASAQLARGKFQGLTMAEGDLFLFSSKTIPGNERGVIQIMNAFSEQGVDVVDD
SSGKYHVSGHANRPDLETMHALVNPQLVIPMHGEHRHLREHVKVAGAGGRKGVLAVNGMM
MDLSGNEPTVAEYVETGRTYLDGSVKIGALDGIVRDRIRMALNGHVIVTVILDEDDELLG
EPWCEIMGLPEMGRSNAPLVDALEEDLSQFIGRAGDKTITDDDKLEEGLRRIARQTTQNE
IGKKPEVTVVISRLA
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtgaacggatcatctacctgccccttggcggggccggcgaaattggcatgaac
gcctatgtctatggctatggtaagcccgggaaggagcgcctgatccttgtcgatctgggc
gtcacctttcccgacatggacggcacgccaggagtagatctgatcctgccggatatcgcg
tggctgaaggagcggcgcaatcagcttgaggcgatcttcatcacccatgcgcatgaagac
cacgtgggggccatcggccatttctgggaagagcttggcgcgccgatctatgcgcgggct
ttcacggcgcatatcgcgcggctcaagatggaggatgcaggccagtcgccggagaccgtg
cgcaccgtgtcgccctggccggaaacggttgaggccggtcctttcaaggtagggttcgtg
ccgatctcgcactcgatccccgaaagctcgggtctggtgattgacacgccacaggggcgg
atcgtgcattcgggcgatttcaagatcgacgaaacccccgtggtgggcgaggcctttgac
cgggctctgtgggaggagatcggcaagccgggtgtgaaggcgctgatctgcgattccacc
aacgtgttttccggtcacgccgggcggtcggaagcgaccgtcggacccgagatcgagacc
ctcgtgcgcgatgcgaccggtatggtggtggcgacgacctttgcctcgaacgtggcgcgg
gtgaagacattggcagaagcggcggtgcgggccggacggtcggtctgccttttgggccgt
gcgatgcggcgcatgatcgaagcatcgatcaagaccggcgttctggcggatttcccgacc
gtggtcagcccggaagaggcaacgcagatcccacgtgagaacctgatgctgatcgtgacg
ggcagccagggtgaacgccgggccgcctcggcgcagctggcgcggggcaagttccaaggg
ctgacgatggcggaaggcgatctgttcctgttctcgtcgaagaccattccgggcaatgag
cgcggtgtgatccagatcatgaacgcgttttccgaacagggtgtggacgtggtggatgac
agttctggcaagtaccacgtgtccggtcacgccaaccgtcccgaccttgagaccatgcac
gcgctggtcaatccgcaactggtgatcccgatgcatggcgaacatcgccatctgcgcgaa
cacgtaaaggtcgcaggtgccggtggccgcaaaggtgtgttggcggtcaacggcatgatg
atggacctcagcggcaatgagccgacggtggccgagtatgtcgaaacgggccgcacctat
ctggatggttcggtcaagatcggggcactggacgggatcgtccgtgaccggattcggatg
gcgctgaacgggcatgtgatcgtcaccgtcattctggacgaagatgacgagttgctgggt
gagccgtggtgcgagatcatgggccttcccgaaatgggtcgcagcaatgcgccgttggtc
gatgcgctggaagaagacctgtcgcaattcatcggccgggccggggacaagacgatcacc
gacgatgacaagctggaagaagggctgcgccggatcgcacgtcagacgacgcagaacgag
atcggtaagaagcccgaagtcaccgtcgtgatcagcaggcttgcatga
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