KEGG   Marivita sp. tig00000067: ACMVPR_04360
Entry
ACMVPR_04360      CDS       T11113                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
matg  Marivita sp. tig00000067
Pathway
matg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:matg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACMVPR_04360
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:matg03019]
    ACMVPR_04360
Messenger RNA biogenesis [BR:matg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ACMVPR_04360
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: XOY47010
LinkDB
Position
878380..880047
AA seq 555 aa
MSGERIIYLPLGGAGEIGMNAYVYGYGKPGKERLILVDLGVTFPDMDGTPGVDLILPDIA
WLKERRNQLEAIFITHAHEDHVGAIGHFWEELGAPIYARAFTAHIARLKMEDAGQSPETV
RTVSPWPETVEAGPFKVGFVPISHSIPESSGLVIDTPQGRIVHSGDFKIDETPVVGEAFD
RALWEEIGKPGVKALICDSTNVFSGHAGRSEATVGPEIETLVRDATGMVVATTFASNVAR
VKTLAEAAVRAGRSVCLLGRAMRRMIEASIKTGVLADFPTVVSPEEATQIPRENLMLIVT
GSQGERRAASAQLARGKFQGLTMAEGDLFLFSSKTIPGNERGVIQIMNAFSEQGVDVVDD
SSGKYHVSGHANRPDLETMHALVNPQLVIPMHGEHRHLREHVKVAGAGGRKGVLAVNGMM
MDLSGNEPTVAEYVETGRTYLDGSVKIGALDGIVRDRIRMALNGHVIVTVILDEDDELLG
EPWCEIMGLPEMGRSNAPLVDALEEDLSQFIGRAGDKTITDDDKLEEGLRRIARQTTQNE
IGKKPEVTVVISRLA
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgagcggtgaacggatcatctacctgccccttggcggggccggcgaaattggcatgaac
gcctatgtctatggctatggtaagcccgggaaggagcgcctgatccttgtcgatctgggc
gtcacctttcccgacatggacggcacgccaggagtagatctgatcctgccggatatcgcg
tggctgaaggagcggcgcaatcagcttgaggcgatcttcatcacccatgcgcatgaagac
cacgtgggggccatcggccatttctgggaagagcttggcgcgccgatctatgcgcgggct
ttcacggcgcatatcgcgcggctcaagatggaggatgcaggccagtcgccggagaccgtg
cgcaccgtgtcgccctggccggaaacggttgaggccggtcctttcaaggtagggttcgtg
ccgatctcgcactcgatccccgaaagctcgggtctggtgattgacacgccacaggggcgg
atcgtgcattcgggcgatttcaagatcgacgaaacccccgtggtgggcgaggcctttgac
cgggctctgtgggaggagatcggcaagccgggtgtgaaggcgctgatctgcgattccacc
aacgtgttttccggtcacgccgggcggtcggaagcgaccgtcggacccgagatcgagacc
ctcgtgcgcgatgcgaccggtatggtggtggcgacgacctttgcctcgaacgtggcgcgg
gtgaagacattggcagaagcggcggtgcgggccggacggtcggtctgccttttgggccgt
gcgatgcggcgcatgatcgaagcatcgatcaagaccggcgttctggcggatttcccgacc
gtggtcagcccggaagaggcaacgcagatcccacgtgagaacctgatgctgatcgtgacg
ggcagccagggtgaacgccgggccgcctcggcgcagctggcgcggggcaagttccaaggg
ctgacgatggcggaaggcgatctgttcctgttctcgtcgaagaccattccgggcaatgag
cgcggtgtgatccagatcatgaacgcgttttccgaacagggtgtggacgtggtggatgac
agttctggcaagtaccacgtgtccggtcacgccaaccgtcccgaccttgagaccatgcac
gcgctggtcaatccgcaactggtgatcccgatgcatggcgaacatcgccatctgcgcgaa
cacgtaaaggtcgcaggtgccggtggccgcaaaggtgtgttggcggtcaacggcatgatg
atggacctcagcggcaatgagccgacggtggccgagtatgtcgaaacgggccgcacctat
ctggatggttcggtcaagatcggggcactggacgggatcgtccgtgaccggattcggatg
gcgctgaacgggcatgtgatcgtcaccgtcattctggacgaagatgacgagttgctgggt
gagccgtggtgcgagatcatgggccttcccgaaatgggtcgcagcaatgcgccgttggtc
gatgcgctggaagaagacctgtcgcaattcatcggccgggccggggacaagacgatcacc
gacgatgacaagctggaagaagggctgcgccggatcgcacgtcagacgacgcagaacgag
atcggtaagaagcccgaagtcaccgtcgtgatcagcaggcttgcatga

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