Marivita sp. tig00000067: ACMVPR_17000
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Entry
ACMVPR_17000 CDS
T11113
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
matg Marivita sp. tig00000067
Pathway
matg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
matg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACMVPR_17000 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
matg03019
]
ACMVPR_17000 (recQ)
03400 DNA repair and recombination proteins [BR:
matg03400
]
ACMVPR_17000 (recQ)
Enzymes [BR:
matg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACMVPR_17000 (recQ)
Messenger RNA biogenesis [BR:
matg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACMVPR_17000 (recQ)
DNA repair and recombination proteins [BR:
matg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACMVPR_17000 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
DUF7091
Rhodanese
AMP_N
ResIII
Motif
Other DBs
NCBI-ProteinID:
XOY49383
LinkDB
All DBs
Position
complement(3480200..3482254)
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AA seq
684 aa
AA seq
DB search
MPRDMSDADAILRDIFGFDSFRPGQSEIVEAVSHGENVLAIMPTGGGKSLCFQLPALVRH
GVTVVISPLIALMRDQVRGLREAGVNAGALTSANTDEENDAVWDMLHSGALKLLYLAPER
LASSGTQRMLQQAGVSLIAVDEAHCVSQWGHDFRPDYLRIGELRRALDVPLAAFTATADA
ETQEEIVNRLFDGHAPTTFLRGFDRPNIHLMFAPKNKPREQILQFAAARKDQSGIVYCGT
RAKTETLAQALNAEGHTACFYHGGMDPDARRSVEARFATEDGLIVVATVAFGMGVDKPDI
RWVAHADLPKSIEAYYQEIGRAGRDGAPAETLTLYGSDDIRLRRSQIDEGLAPPERRHAD
HGRLNALLGLAEALACRRKTLLGYFGESDITCGNCDLCDKPAEVFDGTEAVRKALSAALR
TGESFGAGHLIDILLGTKTEKVLQRNHDSLPTFGIGTELKRGEWQAVFRQMMGHDLMRPD
AERHGALVMTEAARPILRGEATIHLRRDSLEAASERRPQVRTLVSDEDAPLLSALKAKRR
ALAEEQSVPAYVIFPDKTLIEMAETRPKSLDDMARINGVGAKKLERYGRAFLAVIAGDVP
DTHPARRKLAASGAGGLYDALLESQAQLVRGACGTLKPMSCNAGQLAKLAQSKPRDESGI
ARIIGDRHAERFAETFLDVLRNAD
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcgatatgtctgacgcagatgccattctgcgcgatatctttggattcgacagt
tttcgtcccggccagtccgagattgtagaggctgtttcacatggggaaaacgtgttggcg
atcatgccaacgggtggcggcaaatcgctttgtttccaactgcctgcgctggtgcgccat
ggcgtgacggttgtcatctctccgttgattgccctgatgcgggatcaggtgcgcggcttg
cgcgaggcaggtgtcaacgccggtgccttgacctcggccaacacggacgaggaaaacgac
gcggtttgggacatgctccattccggtgctttgaaactgctctatcttgcgcccgaacgg
cttgcctcaagcggaacgcagcggatgctgcaacaggcgggtgtgtccctgatcgctgtg
gatgaggctcattgcgtcagccagtggggtcatgatttccgtcccgattatcttcgcatc
ggtgaattgcgccgcgcgctggatgtgccactggccgcctttacggcgacggcggatgcg
gaaacgcaggaagagatcgtcaatcggctgtttgatggacatgcgccaacgacgtttttg
cgggggtttgaccggcccaacatccacctgatgttcgcccccaagaacaagccgcgtgag
caaattctgcaattcgccgctgcccgcaaggatcagtcgggcatcgtctattgcggcacc
cgcgccaagaccgaaacgctggcgcaggctcttaatgccgaagggcatactgcgtgtttc
taccacggcgggatggaccccgatgcgcgccgcagcgtcgaggcgcgatttgccaccgaa
gatgggctgatcgtcgtcgccacagttgcctttggcatgggcgtcgataaaccggacatt
cgttgggtcgcgcatgccgacctgccgaagtccatcgaagcgtattatcaggaaatcggt
cgcgccgggcgtgacggcgcgcctgccgaaacgctgacgctttacgggtccgatgacatc
cgcttgcgccgctcgcagatcgacgaagggcttgcgccgcccgaacgccgtcatgccgac
cacgggcggttgaatgcgctgttggggttggcagaggcgctggcgtgccgacgcaagacg
ctgcttggctattttggtgaatcagacatcacctgcgggaactgcgatctttgcgacaaa
ccggcagaggtgttcgacggcaccgaggcggtccgaaaagcattatccgctgcactgcgc
acgggtgaaagctttggtgcagggcatctgatcgacattctgttgggcacaaagaccgag
aaggtcttgcaacgcaatcacgacagcctgcccacctttggcataggaaccgagctgaag
cgcggggaatggcaggctgtgtttcggcagatgatgggccatgacctgatgcgccctgat
gctgaacgacacggagccttggtcatgaccgaagccgcccgtcccatcctgcgcggcgag
gcaacgatccatctgcgccgcgacagtcttgaagcggccagcgaacgccgaccgcaggtt
cgcaccttggtcagcgacgaagacgcgccgctgctctcagcactcaaggcaaaacgtcgt
gctttggcagaagagcaatccgtcccggcctacgtcattttccctgacaagacgctgatc
gaaatggcagagacccgtccaaaatcactggacgacatggcgcggatcaatggtgtgggc
gcaaagaaactcgaacgttatggacgcgcgtttcttgcggtcatcgcgggcgatgttcct
gacacgcatcccgcgcgccgcaaactggcagccagtggggccggtggcctgtatgatgcg
ctgctcgagtcgcaggcgcagctggtccgcggtgcgtgtggcacgctgaaaccaatgtcg
tgcaatgcaggccagcttgccaaactggcgcagtccaaaccgcgcgatgaaagcgggatt
gcacgcatcatcggcgatcggcacgcagaacggtttgccgagacgtttctggacgtcctt
cgcaacgcggactag
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