Marinomonas sp. THO17: THO17_00460
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Entry
THO17_00460 CDS
T10670
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
math Marinomonas sp. THO17
Pathway
math03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
math00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THO17_00460 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
math03400
]
THO17_00460 (mfd)
Enzymes [BR:
math01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THO17_00460 (mfd)
DNA repair and recombination proteins [BR:
math03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
THO17_00460 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
SNF2-rel_dom
RecG_dom3_C
LcrG
Motif
Other DBs
NCBI-ProteinID:
BFM47883
LinkDB
All DBs
Position
complement(45716..49129)
Genome browser
AA seq
1137 aa
AA seq
DB search
MTQDTSITFKPGFKNHLEGLDGSRKALQLLALSSQYTKPILYIVNTVAELNELEDEIHFL
KPEQQQVLRFSDWETLPYDGFSPHQDIISQRLETLAKITESQQLIILTTVASCLTRLCPQ
QHLDSERFHLKEGQQLALQNLADKLSKAGYLNVDNVHEHGEFAVRGALMDIYPTGARQPI
RIDWFDDEIDSIRWFDPETQRSISKVSEVNMLPAKEFPTTSQSIQRFRQAFRERFETDPL
SSPIYQDISSGIMPAGIEYYLPLFFDQTSHLFHYLSEDTLIIRNHVFNEQLASVQLDYRS
RYESLSYNIERPILKPEEICLTEEELFAELNQFTNVIFSAEGEHPLYKGPVDVKIDSKAE
SPLTKLSSFLDQTHHRVLILAESAGRREALLELLKKHNIQPKQVKDWADFTNSSHTLAIT
EGLIGRGFTIQDDITLIPESDILGERVSQHRRRNRQQNISEDAIIRNLTELRLNAPVVHI
DHGVGRYLGLTNLEIDGQETELLTLGYANDAKLYVPVSSLQLISRYTGADEETAPLHKLG
TDKWSIAKQKAAEKARDTAAELLEIYAKREAKVGHNFAKPDDQYEVFAAGFPFEETPDQQ
MAIDAVIQDMAAKKTMDRLVCGDVGFGKTEVAMRAAFLAVQDGKQVAVLVPTTLLAQQHF
ENFCDRFADWPVEVELLSRFRSGKQTTVAIDRLESGKADIVVGTHKLIQGDIKFANLGLV
IIDEEHRFGVKQKEQFKALRSEVDILTLTATPIPRTLNMSLSGIRDLSIIATPPAKRLSV
KTFVKQKDEHQIKEAILRELHRGGQVYYLHNEVQTIQKTAEELETLIPEARVIVGHGQMR
ERELEQVMSDFYHKRANVLVCSTIIETGIDIPNANTIIIERADKFGLAQLHQLRGRVGRS
HHQAYAYLLTPNDRNITSDAEKRLEAISLADTLGAGFTLATHDLEIRGTGELLGEGQSGH
IEHVGFSLFMEMLDRAVKSLKNGESPDVDIATPAQTDINLRVPALIPEDYLGDVHSRLIL
YKRIASASSSEELKDLQVEMIDRFGLLPDATKNLFRQTEIKLKAEQLGINKIEANAKEGK
IFFNSKTPVDPMKLISLIQKKPDHYKLAGSDTLKFLVPMISAEDRFQQTTKTLELLH
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgacacaagacacgtccataacattcaagcccggctttaaaaatcatctcgaaggcttg
gacggcagccgtaaagctctgcaattactggcgctttcttcacaatacactaagcccatt
ctttatatcgttaataccgttgctgaactgaatgagctggaagacgaaattcacttcctc
aaaccagaacaacaacaggtgttacgttttagcgattgggaaaccctaccatacgatggc
ttttcacctcatcaagacattatttctcagcgccttgaaacactcgctaaaatcaccgaa
agtcagcagcttattatcttgaccacagtggcttcctgtctaacgcgcttatgcccacag
caacatttggacagcgaacgttttcatcttaaagaaggtcaacaactcgccttacaaaat
ttggccgataaattaagcaaagcaggctatttaaatgtagacaatgttcatgaacatggg
gaatttgctgttcgcggcgccctgatggacatctatccaacaggggcacgtcagcccatt
cgtattgattggttcgatgacgaaattgactccattcgctggtttgacccagaaacccag
cgcagcatcagcaaagtctctgaagtaaacatgttgccagcgaaagaatttcctactacc
agccaaagcatccaacgctttcgccaagcctttcgagagcgctttgaaacggatccttta
tccagccctatctatcaggacatttccagtggcatcatgccagccggcatcgaatactac
ttacccttgttttttgatcaaacttcacacctatttcactatttaagtgaagacactcta
atcattcgcaatcatgtatttaatgaacaattggcaagtgttcaattagattaccgcagc
cgttacgaatcgttgagctacaacattgaacgccccattctcaaaccagaggaaatctgt
ttaacagaagaagagttattcgccgaactcaatcaatttaccaatgttattttttcggcc
gaaggcgagcaccctctttataagggaccagtggacgtcaaaatagactccaaagccgaa
tccccattgacaaaactgtctagcttccttgatcagactcatcatcgtgttttaattttg
gccgaatccgcaggacgtcgcgaagctttattagaattgctgaaaaagcacaacatccag
cccaagcaggttaaagattgggcggactttaccaattcatcccacactttagcgattacc
gaaggattaattggtcgtggctttaccatccaagatgacattactctgattccagaaagt
gacattctgggcgagcgtgtgtcacaacatagacgccgcaacagacaacaaaacatcagt
gaagatgccattattcgcaaccttactgaactgcgccttaacgcacctgtggtgcacatt
gatcatggggtaggacgttatttaggtctgaccaatctggaaatcgatggtcaagagacc
gaattgctgacattaggctacgccaatgacgctaagctttacgtgcctgtttcttcgttg
caacttatctcacgctacactggagccgatgaagaaaccgccccactgcacaagctcggt
accgacaaatggagcatagccaaacaaaaagccgctgaaaaagcccgtgacacagcggca
gagctgttggaaatttatgctaagcgtgaagccaaagtaggtcataactttgctaaaccc
gacgaccagtatgaagtctttgcagccggtttcccgtttgaggaaaccccagaccaacaa
atggccatcgacgccgtcattcaggatatggccgctaaaaaaaccatggatcgcttagtg
tgtggtgatgttggctttggcaaaaccgaagtagccatgcgcgcggctttcctagcggtg
caagatggcaagcaagtcgcggttttagtgccaacgacgctacttgcccaacagcatttc
gaaaatttctgtgatcgatttgctgattggccagttgaagtggaattattatcccgcttt
cgctcaggcaaacaaaccacagtcgcaattgatcgcctcgaatcgggcaaagccgacata
gtggttggcacccacaaactcattcaaggtgatattaaatttgccaatttagggctggtc
attatcgatgaagagcacaggttcggcgtcaaacaaaaagagcaatttaaagccttgcgc
tccgaagtcgacattttgacccttaccgctacgccgatcccaagaacgctcaatatgtct
ttatctggcattcgcgacttgtccattattgccacaccacccgcaaaacgtttatcggtg
aaaacctttgttaagcaaaaagacgagcatcaaatcaaagaagctattttgcgcgagcta
catcggggtggccaagtctattatctgcacaacgaagtacaaaccattcaaaaaacagca
gaagaattagaaaccttaattccagaagcccgcgttattgtcggccatggtcaaatgcgt
gagcgtgaactggaacaagtcatgtcagacttttaccataaacgcgccaatgtgctcgtc
tgctctactattatcgagacgggtatcgatattcctaacgctaacaccatcatcattgaa
agagccgataaatttggtttagctcaattacatcaattacgaggccgggttggccgctct
catcaccaagcttacgcttatttgttaacaccaaacgatcgtaacatcacatccgatgcc
gaaaaacgccttgaagccatcagtttggccgatacccttggtgctggctttacccttgct
acccatgatttagaaatccgtggtacaggagaattactgggtgagggtcaaagcggccac
attgaacatgttggcttctcacttttcatggaaatgttagatagagcagtaaaatcctta
aaaaatggtgagtcaccggatgtcgacattgccacaccggcacaaaccgatattaatttg
cgcgttccagcgctgattcctgaagactaccttggcgatgtgcattcgcgtctcatttta
tacaaacgcattgccagcgccagcagcagcgaagaacttaaagatctgcaagttgaaatg
attgaccgctttggtttattgcctgatgctacgaaaaatctgtttagacaaaccgaaatt
aaactcaaagctgaacagcttggcattaataaaattgaagcgaacgcaaaagaaggtaaa
atcttcttcaatagtaaaacgcctgttgatcctatgaagctgatcagcctgattcagaaa
aagccagatcactacaaactggctggctcagacactttgaaattcttagtgccaatgatc
agtgctgaagaccgcttccaacagaccaccaaaacgttggaattattacattga
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