Marinomonas sp. THO17: THO17_05080
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Entry
THO17_05080 CDS
T10670
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
math Marinomonas sp. THO17
Pathway
math03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
math00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THO17_05080 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
math03019
]
THO17_05080 (rne)
03009 Ribosome biogenesis [BR:
math03009
]
THO17_05080 (rne)
Enzymes [BR:
math01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
THO17_05080 (rne)
Messenger RNA biogenesis [BR:
math03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
THO17_05080 (rne)
Ribosome biogenesis [BR:
math03009
]
Prokaryotic type
rRNA processing factors
THO17_05080 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
ParcG
Motif
Other DBs
NCBI-ProteinID:
BFM48345
LinkDB
All DBs
Position
548306..551494
Genome browser
AA seq
1062 aa
AA seq
DB search
MIRMLINATQQEELRVALVDGQRLYDLDIESGSREQKKSNIYKGKITRVEPSLEAAFVDF
GAERHGFLPLKEISKTYFSKKVSNDGRINIKDVISEGQEVIVQVDKEERGNKGAALTTFV
SLAGRYLVLMPNNPRAGGISRRIDGDDRSQLKEAMSGLSTPENGGLIVRTAGVGRSTEEL
QWDLDYLETLWASITKAAAEKPAPFLIYQESNIVIRAIRDYLREDIGEVLIDEKQAYQDA
VNFVMQVMPHFKSRIKLYTDSTPLFNRFQIETQIETAFQREVRLPSGGSIVIDPTEALVS
IDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPVRNQKEVEN
RMKNALEADRARVQLGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGFIRDVESLAL
SVLRLIEEECAKERTAQIRAVLPVSVATFLLNEKRTNIAKIEKRNSVHIILVPNPHMETP
HFEVERIRDDNSVISQNDTSYNLVETPEQPPYEPRQVSETLHQQAAVTSIAPKAPAPAHS
ASATKAKSTNPSLLKRILVALFGDASGQKTNNKSNTSKASANNSKNRNNKGKNNRPNRNK
RNLKHQSNERADAMQEKPRSTRQSRREQAEAGHNNANKNGRRNNRSNRNNQDGKVETQEQ
AKVSRPPKEVPEVKERKRDRNENRRRNGKIKDEAQEAAKLQEVAEATKAEAVQQTQADIQ
ESTSENTQDDTQPRRSRRSRRSRRPQNNENTIIENSKVEDKLVEETDVSEDKLVASATDA
SVEIIDESVTPVKNELNTRDTDTASAALDALDENANQDDNKPTVEPYAEDSQATVEHTEQ
VPAGAEVETETAEKTEQKAKVKPKMSVKAQISTEVPSVQQESEVAEQSRTQSDHSDVSLE
ETQTMTTSSEKVEQAEEIDKIEEQATDEKASRVETSAVSVEVEAQETNLTPETEAQKVNN
EPLAEVEPTDVTTDENSEVTTKKVRVARRGRGKPATKPVTETAAPVELPAAILAQQEKFR
QEQEEKRNASASRRRASKGRVKNDPRLMREESQTAEESIESN
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgattagaatgttaataaatgcaactcagcaagaagaattgcgtgttgccttggtagac
ggtcagcgtctatacgatcttgatatcgaatccggctctcgtgagcaaaaaaaatccaat
atatacaaaggtaaaattactcgtgttgaaccgagtttagaagctgccttcgtagacttt
ggtgcagaacgacatggattccttccactcaaagaaatatccaaaacctacttctctaaa
aaagtcagcaatgatggtcgcatcaatatcaaagatgtgatcagcgaaggccaagaagtt
attgttcaagttgataaagaagaacgaggcaacaagggtgcggcactaacaactttcgtc
agtttggctggtcgttacctagtattgatgcctaataatccgcgtgctggtggtatttct
cgccgtatcgatggcgatgatcgttcacaattaaaagaagccatgtctggtctttctact
ccagaaaatggcggcttgatcgtccgtactgctggcgtagggcgatctacggaagagcta
caatgggatttggattatctagaaactctttgggcctccatcaccaaagcggcagcagaa
aaacctgcacccttcttaatttatcaagagagtaatattgttattcgcgccattcgtgat
tatttacgcgaagacattggtgaagtacttattgatgaaaaacaagcttaccaagatgca
gtcaactttgtgatgcaggtgatgccgcatttcaaatctcgtatcaagctttatactgat
tccacccctttatttaaccgtttccaaatcgaaactcagatagaaaccgccttccagcgt
gaagtccgcctgccttctggtggttccattgtcattgacccaacagaagccctagtctct
atcgatattaactcagcacgggcaaccaaaggtggtgacatcgaagagacggcattgcag
actaacttggaagcagccgatgagattgctcgtcaattacgtcttcgtgatatcggtggt
ttggtggttattgacttcatcgatatgacaccagtacgcaatcagaaagaagttgaaaac
cgtatgaaaaatgccctagaggctgatcgtgcgcgagtgcaattaggcaggatttcacgc
tttggattgttggaaatgtctcgtcagcgcttgcgcccttctcttggcgaaaccagcggt
attgtgtgtcctcgttgtaacgggcaaggcttcattcgtgatgtagagtctttagcccta
tcggtacttcgccttattgaagaagaatgtgcaaaagaaagaaccgcgcaaatacgcgcc
gtattacctgtttctgttgccaccttcttgctaaatgaaaagcgtaccaatattgctaaa
attgaaaaacgtaacagtgttcatatcatattggtgccaaacccacacatggaaaccccc
cactttgaagtggaacggattcgtgatgacaactcagttatctctcaaaatgacaccagc
tacaatttggtagaaacacctgaacaacccccttacgagccaagacaagtaagcgaaacc
cttcatcagcaagctgcggtaactagcattgcacctaaggcccctgcaccggcacattct
gcttcagcaacgaaagccaaatccacaaacccaagcttgctaaaacgcattttagtggct
ctatttggtgatgcttctggtcaaaaaaccaacaacaagagcaacacctcaaaagcctct
gcaaataattcgaagaatcgaaacaataagggtaaaaacaaccgccctaaccgcaacaag
cgcaacctgaaacaccaaagcaatgaacgcgctgatgctatgcaagagaagccgcgctct
actcgccaatcacgtcgcgagcaagctgaggctggtcataataacgctaataagaatggt
cgtcgcaataaccgctctaatcgtaataaccaagacggcaaggtagaaacacaagagcaa
gcaaaagtgtctcgtccaccaaaagaagtgcctgaggtgaaggagcgtaaacgtgatcgc
aatgaaaatcgtcgtcgcaacggtaaaataaaagacgaggctcaagaggccgccaagtta
caagaagtagcagaagcaacaaaagcggaagcagtacaacaaacacaagctgacattcaa
gagtctactagcgaaaacactcaagatgacactcagcctcgtcgttctcgtcgatctcgc
cgctcccgtcgtccgcaaaacaatgaaaatacaattattgaaaatagcaaggttgaagac
aagctagttgaagaaacagacgtttccgaagacaagcttgttgcatcggcgacagacgcc
agtgtagagatcatagatgaatcggtaacacctgtaaaaaatgagctaaatacacgtgat
actgataccgcttccgcagccctcgacgcattagatgaaaatgccaatcaggatgataat
aagccaaccgtagaaccctatgctgaagactctcaggcgactgtagagcacacagagcaa
gtaccagcaggagctgaagttgaaacagaaaccgctgagaaaacggaacaaaaagcaaaa
gttaagcctaaaatgtccgttaaagctcaaataagtactgaggttccttcagttcagcaa
gaaagcgaagttgcagagcaatcaaggactcaatctgatcattcggatgtgtctctagaa
gaaacgcaaacgatgacaacctcttctgaaaaagttgaacaagctgaagaaatagataaa
atcgaagaacaagctactgatgaaaaggcttctagggttgaaacaagtgccgtaagtgtg
gaagtagaggctcaagaaaccaatttgacgccagaaacagaagcgcaaaaagtaaataat
gaaccacttgctgaagttgagccaactgatgtaacaacagacgaaaacagcgaagttact
actaagaaggttcgtgttgctcgtcgcggtcgcggtaaacctgctaccaaaccggtaacc
gaaacggcagctccggtagaattgccggcggctattttggctcaacaagaaaaatttcgc
caagaacaagaagaaaaacgcaatgcatctgcctctcgacgccgagcatcaaaaggccgt
gttaaaaacgacccaagattaatgcgtgaagagagccaaacggctgaagaaagtatcgaa
tcaaattag
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