Marinomonas sp. THO17: THO17_05820
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Entry
THO17_05820 CDS
T10670
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
math Marinomonas sp. THO17
Pathway
math03420
Nucleotide excision repair
math03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
math00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THO17_05820
03430 Mismatch repair
THO17_05820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
math03400
]
THO17_05820
Enzymes [BR:
math01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THO17_05820
DNA repair and recombination proteins [BR:
math03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THO17_05820
MMR (mismatch excision repair)
Other MMR factors
THO17_05820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_30
AAA_12
PLU-1
Motif
Other DBs
NCBI-ProteinID:
BFM48419
LinkDB
All DBs
Position
complement(646218..648533)
Genome browser
AA seq
771 aa
AA seq
DB search
MSEDILRQTQMSASANRLTDEQMAVVQHDLTRPAKVIAVAGAGKTTTLIARIEYLLSQGV
DAAQIGVFMFNKSAQEEFSQRLHQALAHKGWRAPSVMTFHAFGMRLCRRLEQAGWLETAK
LLTDDFSLIKLLREAMQGLLKRGEKVTIQDEKDWLEDMLLFIDQVKASNMAAQDVFEQLA
WSKERRFFVALYEELENLRRRQKIRFFADLLSDPYALIAQLSAEDLHRISALVPNFQILL
IDEFQDINPCQYALLKRLYPAPCQWMIVGDVQQCIYEWRGASPDIMARQFDVEFADTVTY
PLSTSFRFGHAVGLMASSVISENDGNALVVGMGERTRVSFAKSAKTGKALLGELKAWLDE
GQSLDDCAVLVRLYSDMVPVQLALMHKGVPYQLHGDSPLLENRQIRMLMAYLAVMAGGLE
QAKVFFQADDLEYLLTVPSLGGAVAQRRHLIQQAKQAPHLLPQIIENMADSTEGWRGKKL
LERADWLRSLSAYRKDPAQGLLVTLEKLGIYRYFESTSSKDIQAQEKIATCEAFIAYVRG
VGGEAASILQQLASLNERQSDVAQGVHLMTIHKSKGLEFGQVLLCGLQEGRFPYYEEDLS
AIDKQAANELAAERRLFYVAMTRARHKLVILETPSADENKQLKLGNIPRAGIKSLSLSRF
IFEAQPFAVSQICDAWYQARDGDVIDTEKGSVFQRYLAFVQPSPRLSFRHKVAGKSQLKP
GDKVRHDQFGQGVVVRQEQNDRQMIFVDFGEAGLKRFNPKHTKLVKVSSRT
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgaagacattttgcgtcaaacacaaatgagtgcatccgctaatcgcttaacggat
gagcaaatggctgtggtgcaacacgacctaactcgtcctgctaaggtcattgccgtagcg
ggggcgggtaaaaccaccaccttgattgctcgcatcgagtatctgttgtcacagggtgtg
gatgctgctcagataggcgtttttatgttcaataaaagcgcgcaagaagagttttcccaa
cgcttgcatcaagccttggcccataaaggctggcgtgcgcccagtgtgatgacctttcat
gcttttggtatgcgcttgtgtcgtcgtttggagcaagcaggctggcttgagacggccaag
ttgctaacggacgatttcagtctgatcaagttattgcgtgaggccatgcaggggttgctg
aaacgcggtgaaaaagtgaccatccaagacgaaaaagactggctggaggacatgctgctc
tttatcgatcaggtgaaagcgtcaaacatggcggcacaggatgtgtttgagcagttagct
tggtcgaaagaacggcgcttttttgtggccttgtatgaagaattggaaaatctgaggcga
cgtcaaaaaatacgcttctttgccgatttgttgagcgatccttatgcgctcattgctcaa
ttaagcgcagaagatttgcatcgtattagtgctttggtgcccaatttccagatcttattg
attgatgagtttcaagacatcaacccttgtcagtatgcgttacttaaacgtctctatcct
gctccttgtcaatggatgatagtaggcgatgtgcaacaatgtatttatgaatggcgcgga
gccagtccagacattatggcgcgtcaatttgatgttgagtttgccgataccgtgacttat
cccttgagtaccagcttccgctttggtcatgcggtggggctgatggcgtccagtgtgatt
agtgaaaatgacgggaatgctctggtggtgggaatgggagagcgaacacgagtctccttc
gccaagtctgcaaaaaccggcaaggcactgcttggtgagctcaaagcctggttggatgaa
ggtcagtcgctggatgattgcgcggttttggttcggctttacagtgacatggtacctgta
caattggcgctgatgcacaagggggtgccgtatcagttgcacggcgactcgcccctgttg
gaaaaccgacagattcgtatgctgatggcgtatttggcggtgatggcaggcggattagaa
caagccaaggtgtttttccaagcagatgaccttgagtacttgctgaccgtacccagttta
ggtggtgcggtagcgcaacgtcgacacttgattcaacaagccaaacaagccccacatttg
ctaccacaaatcattgagaacatggcggacagtacagaaggctggcgagggaaaaaattg
ctcgaacgagcagattggctgcgcagtttgagtgcgtatcgcaaggatcctgcacaaggc
ttgcttgttaccttggagaaactcggtatctatcgatactttgagagcaccagcagtaag
gacattcaagcgcaagaaaaaatcgccacttgtgaggcctttattgcttatgttcgaggt
gtgggaggggaagcggctagcattttacaacagctggcaagcttgaatgagcgccaatcc
gatgtggcacaaggtgtgcatctgatgacgatccataaatccaaaggcttggagtttggg
caagtacttttgtgtggcttgcaagaaggtcgttttccttattatgaagaagacttgagt
gcaatcgacaagcaagccgctaatgaactggcggctgagcggcgtttattttatgtggcc
atgacacgagcccgtcataagttagtgatattagaaacgccaagtgctgacgagaacaaa
caattgaagctggggaatatccccagagccggtataaagtccttgtcattatcacgtttt
atttttgaggctcagccctttgcggtgagccaaatatgcgatgcttggtatcaagctcgt
gatggtgatgtgattgatacggagaaaggctcggtttttcagcgctacttggcgtttgtt
cagccgtcacccaggctttccttccgtcataaggtggcaggaaaaagccaactcaagccc
ggggacaaggtacgtcatgatcaatttggtcaaggtgtggttgtccgacaagagcaaaat
gataggcagatgatttttgtcgattttggcgaagctggattaaaacgttttaatcccaaa
catactaaattagtgaaagtatcttcacggacttaa
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