Marinomonas sp. THO17: THO17_06880
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Entry
THO17_06880 CDS
T10670
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
math Marinomonas sp. THO17
Brite
KEGG Orthology (KO) [BR:
math00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
math03019
]
THO17_06880 (hrpA)
Enzymes [BR:
math01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
THO17_06880 (hrpA)
Messenger RNA biogenesis [BR:
math03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
THO17_06880 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
WHD_HA2
AAA_22
AAA_19
nSTAND3
SRP54
ResIII
T2SSE
nSTAND_NTPase5
AAA_25
NACHT
PhoH
SLFN-g3_helicase
ABC_tran
AAA_23
TsaE
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BFM48525
LinkDB
All DBs
Position
complement(754421..758305)
Genome browser
AA seq
1294 aa
AA seq
DB search
MDTMQNHLVMTKDRHRISRKQEQIDKRQKDGLPFDKLTKELADLVAQSRQGYEARLAAMP
NVRYDESLPVAARADEIIQAIEAHQVVIIAGETGSGKTTQLPKMCLQAGRGQAGLIGHTQ
PRRLAARSVAERISDELQVELGEQVGFQVRFSDESSDNTLIKLMTDGILLAEIQQDKRLY
QYDTIIIDEAHERSLNIDFLLGYLKQVLAVRPDLKVIVTSATIDVERFSKHFDDAPIIEV
SGRTYPVEIRYQPLLSKADSELDEDQSMEQGILDAVEWLIAEEKDSGYRGAGDILVFLPG
EREIRETADLLRRADLRSTEVLPLYARLTASEQQRIFKPHSGRRIVLSTNVAETSLTVPG
IRYVIDPGLARISRYSVRSKVQQLPIEKISQASANQRAGRCGRVAEGICIRLYDEADFNN
RPEFTDPEIFRTNLASVILQMANLRLGAVEQFPFVEMPEKRMINDGYRALTELGALKKDR
LTPIGRQLAKLPIDPKLGRILIAAERYGVLSDVSIIVSALSIADPRERPQDKKTQSDQAH
AQDKDEDSDFAVFLNLWERFETQRQALSQNQLRQFCRKQFLNFMRMREWRDIHRQIMIAC
KQLGFKDKASHTRNYEAIHRALLAGLFTQVANKMDDSKDMLGCRSRKLSIFPGSMLFKKP
PQWVMAAELVETSKLYARVVARIDPAWIEEYAGPFVKRQYLDPHFERNQGRVMANEQVSL
YGLIIVPKRRVDYGHVQPEEAREIFIRAGLVEGELRTKLAFYRHNKALIDDLETQEAKLR
KRDILVDDEAVFQFYDQRLPDNVRNLKSLEHFIKTHPDALLMSKADLINQQVAVDDMAFP
DSFALNGVALPIDYKFEPGKTTDGATLKVPVGLLRQLSIEDLGWAVPGYIKERCEALIRA
LPKVLRRRFVPIPQFVDRIYPNLSKEKGDLLEQLSLQIKRETLIDIPLNEWNADKLDAHL
TLNLAVVDERGKVLGQGKDLAQLQRQFSDLVEESFAKFGTKAHEEEGLTEWPEQGIAERQ
EIKQAGIKVTAFPALVSQGDTVALKMFDDQSTAIEAHRKGVITLLKLTLNKEVRYLKKNL
PKLKESMLIFAPLGPKESLLEDLLDAILDKVFLDQRPLPRQKHEFVERVADNKGNLIALA
NDMAEQLYRVLSSYQGVAKRMKGNIPLPWTRIYGDIQFQLGQLIYPGFIGNTPLYWLGQL
PRYFKGIEVRLERFQNHLNKENQFVTELEGLWQTYAKQKKAHDEKALYDPELMKYRWMLE
EYRISLFAQSVGTLEPISAKRLAKQWQEVKKLVS
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
ttggacaccatgcaaaatcatcttgtgatgaccaaagatcgtcatcgtattagtcgtaag
caagagcaaatagacaagcgtcaaaaagacgggttgccgttcgataaattgaccaaagag
ttagccgacttagtggcgcaatctcgtcaaggttatgaggctcgtttggctgccatgcca
aacgtccgttacgatgaaagtcttccggtggcggcgcgagccgatgaaatcatccaggcc
attgaagcacatcaagtggtcatcatcgcgggtgagacagggtcgggaaaaaccactcaa
ttaccgaaaatgtgtttgcaggcaggccgtggtcaagctgggttgattggtcacacgcaa
ccacgacgccttgcagcgcgcagcgtcgcagaacgcatcagtgatgaactgcaggttgaa
ctgggtgaacaggtgggttttcaggttcgttttagtgacgaaagcagcgacaacaccctg
attaaattgatgacagacggtattttgttggccgaaattcagcaagacaaacgtctttat
caatacgacaccatcatcatagacgaagcccacgaacgcagcttgaacattgactttttg
ttgggctatcttaaacaagtgttggcggtgcgcccagatttaaaagtgatcgtcacctcg
gccactatagatgtggaacgtttttccaagcactttgatgatgcgcctattattgaagtc
tctggccgaacctatccggtggaaattcgttatcagcccttattgagcaaagccgattcc
gagttggacgaagatcaaagcatggagcagggcatcttggatgcggtggagtggttaatt
gccgaagaaaaagactcaggctatcgcggtgcgggtgatattttggtgttcctgccgggg
gaacgagaaatccgtgaaaccgcagaccttttacgccgtgctgatttgcgttctaccgaa
gtcttgcccttatacgcaagactgaccgccagcgagcagcaacgcatcttcaagccccat
tcaggacgacgtattgtattgtctactaacgtggcggaaacgtctttgactgttcctggc
attcgttatgtgattgatccgggtttagcgcgcatcagtcgttacagtgtgcgttccaaa
gttcagcagttacccatcgagaaaatcagtcaagccagtgccaatcaaagggcaggacgt
tgtggtcgtgttgcggaagggatttgtattcgtttatacgatgaagcggattttaacaat
cgtcctgagtttaccgatccggaaattttccgtaccaatttggcctcagtcattttgcaa
atggcgaatctgagattgggcgcggtagaacaattccccttcgtggaaatgccagaaaaa
cgcatgatcaacgacggttatcgtgctctgacagagttaggcgccttgaaaaaagatcgt
ttaacgccgattggtcgccagttagccaaattgccaattgatcctaaattaggtcgtatt
ctgattgctgccgagagatatggtgtcttgtctgatgtatctattattgtcagtgctttg
tccatcgctgacccaagagagcgtccgcaagataagaaaacccagtcggatcaagcgcac
gcgcaagacaaggacgaagactcggactttgccgtttttctcaacctttgggagcgattt
gaaacccagcgccaagccctatcgcaaaatcaattacgccaattctgtcgtaagcagttt
ttaaacttcatgcgcatgcgcgaatggcgagacatacatcgccaaattatgatcgcttgt
aagcaactgggtttcaaagacaaagccagtcacacccgtaattacgaagccattcaccgg
gctttgttggctggtttgtttacccaggtggccaacaagatggacgacagcaaagacatg
ttgggctgtcgttctcgtaagctgtctatctttccagggtccatgttatttaaaaagcca
cctcaatgggtgatggcggctgagctggtggaaaccagcaagctttatgcccgtgtggtg
gcgcgcattgatccagcttggattgaagaatacgcagggccttttgtgaagcgtcagtat
ctggatccgcactttgagcgcaatcaaggccgtgttatggccaatgaacaagtgtcctta
tatggcttaatcatagtgcctaagcgccgtgtggattatggtcatgtgcaaccggaagag
gcgcgggaaatcttcattcgagcgggcttagtggaaggagagttacgcactaagctggcg
ttttatcgtcacaacaaagccctaattgacgacttggaaacccaggaagccaagctgaga
aaacgcgatatcttggtcgatgacgaagccgtgttccaattttatgatcagcgtctgcct
gacaatgtgcgcaatctgaaaagccttgagcactttatcaaaacccaccccgatgccttg
ttaatgagcaaagcggatctgatcaatcagcaggtggcggtggatgacatggcctttcct
gattcttttgctttaaatggcgtggccctgcctattgattataaatttgagccgggtaaa
accacggatggcgcgacccttaaagtgcctgtgggcttattacgccagttgagtattgag
gatttgggttgggcagtgccgggttacatcaaagaacgttgtgaggctttaattcgtgct
ttgccgaaagtactgcgtcgtcgctttgtaccgattcctcagtttgtggatcgtatttac
cctaatttatcgaaagaaaaaggggatttactggagcaactgagcttgcagattaagcgc
gaaaccctgatcgacattcccttaaacgaatggaatgctgacaaactggatgcgcatttg
acactcaacttagctgtggtggatgagcgtggtaaggtattaggtcaggggaaagatctg
gcgcaattacaacgtcagtttagtgatctggtagaagaaagttttgctaaatttggcacc
aaggcccatgaagaggaaggactcaccgaatggccagagcagggtattgcagaacgtcaa
gaaatcaagcaagcaggcattaaggtgacggcctttcctgcgctggtgtcgcagggtgac
actgtggcattgaaaatgtttgatgatcaaagcacggccattgaagcccatcgtaagggc
gtgattaccttgctcaagctgaccttgaacaaggaagtgcgctacttgaaaaagaatttg
cctaagctcaaagagtccatgctgattttcgctccattggggccgaaagaatctttgttg
gaggatttgctggacgccattctggataaagtgtttttggatcaacgtcctttgcctcgc
cagaagcatgagtttgttgagcgtgtggccgacaacaaaggcaatttgattgccctagcc
aatgacatggcggagcagttgtatcgtgtcttgtcttcttatcaaggcgtcgccaagcgt
atgaaaggcaatattcctttgccttggacacgcatttacggtgacattcagttccagctt
ggacaacttatttaccctggctttattggcaatacgccactctattggctagggcaattg
ccgcgttatttcaaaggcattgaagtgcgcttggaacgctttcaaaaccacttaaacaaa
gaaaatcagtttgtcacagagcttgaaggcctatggcaaacttatgcaaaacagaaaaag
gcccatgatgagaaagccttgtatgatcccgaactcatgaaataccgttggatgttagaa
gagtatcggatttcattatttgcgcaatcggtcggaacattggagcccatttcggcaaaa
cgccttgccaaacaatggcaagaagtcaaaaaattagtgtcataa
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