KEGG   Marinomonas sp. THO17: THO17_07760
Entry
THO17_07760       CDS       T10670                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
math  Marinomonas sp. THO17
Pathway
math02024  Quorum sensing
math03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:math00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    THO17_07760 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    THO17_07760 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:math03019]
    THO17_07760 (hfq)
   03036 Chromosome and associated proteins [BR:math03036]
    THO17_07760 (hfq)
Messenger RNA biogenesis [BR:math03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     THO17_07760 (hfq)
Chromosome and associated proteins [BR:math03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    THO17_07760 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: BFM48613
LinkDB
Position
complement(858091..858336)
AA seq 81 aa
MSKGQSLQDPYLNVLRKERIPVSIFLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRTIRIPSPDQPEDAAE
NT seq 246 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcaatcattacaagacccttacttaaatgttctacgcaaggaaagaata
cctgtgtcaatctttcttgtgaatgggattaaacttcaaggccaaattgaatcatttgat
cagttcgtgattcttttgaagaacacagtgagccaaatggtatataaacatgctatttca
actgtagtgccttctcgtacaattcgcatcccgtctcctgatcagccggaagatgccgct
gaatag

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