Marinomonas sp. THO17: THO17_24420
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Entry
THO17_24420 CDS
T10670
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
math Marinomonas sp. THO17
Pathway
math03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
math00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THO17_24420 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
math03021
]
THO17_24420 (rpoB)
03400 DNA repair and recombination proteins [BR:
math03400
]
THO17_24420 (rpoB)
Enzymes [BR:
math01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THO17_24420 (rpoB)
Transcription machinery [BR:
math03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
THO17_24420 (rpoB)
DNA repair and recombination proteins [BR:
math03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
THO17_24420 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
BFM50279
LinkDB
All DBs
Position
2644410..2648510
Genome browser
AA seq
1366 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPPVLDVPYLLAIQLESYRNFLQEGKAIAERGELGLHGAFKSV
FPMVSFSGNAALEYVDYRLGKPVFDVKECQLRGVTYAAPLRVRVRLIIYDKESSNKAIKD
IREQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLHSARV
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPATILLRALGYDTEQILETFFETTRFFLKRDG
FEMELIANRLRGDTALFDIADVNGEVIVEEGRRITAKHIRIMEKAGLERLAVPLEYMLGK
VTAKNLAHPATGELIAEANTELSVDLLEALVSSGITEVETLYTNDLDNGPFISDTLRIDP
TSNQLEALVEIYRMMRPGEPPTKESAEGLFQGLFFSEDRYDLSSVGRMKFNRRLGRDEDT
GSGVLDNEDIVSVLKTLLDIRNGNGMVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERAV
KERLSMAEADGLMPQDLLNAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSTYARTNSYGFLETPYRKVV
DGKITDETVYVSAIDEAKYVVAQASANVDQEGRLVDDLVQVRHMHETTLIPKEKVNLMDV
SPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKADKPVVGTGMEKNVAKDSGVC
IVARRGGEIESVDASRIVVRVNSEETIAGEAGVDIYNLTKYVRSNQNTCINQRTLVMKGE
KVAAGDIMADGPSVDMGDLALGQNMRIAFMPWNGFNFEDSILVSERVVEEDRFTSIHIQE
LTCVARDTKLGPEEITADIPNVGEGALSKLDSSGIVYIGAEVEPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSQRVKTGTRGTVIDVQVFTRDGIEKDERAKSIEKSQLDQ
VRKDLNEEFRIVEKATFERLAEALVGQQAEGGPGLARNAVITEDFLANLDHSEWFKIRVA
NEEASEQLEKAQAALIERRKELDAKFEDKKRKLQTGDDLAPGVLKIVKVYVAIKRRIQPG
DKMAGRHGNKGVISKIMPVEDMPYDENGDPVDIVLNPLGVPSRMNVGQVLETHLGAASKG
LGRKINEMLAVEREKAEAVKELRGFLNEIYNGYESDLRCARTEDLDSFSDEEILTLASNL
TGGVPMASGAFDGAKEAEIKRMLRLAGLNESGQVTLYNGRTGDAFERPVTVGYMYMLKLN
HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD
DVNGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELENE
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgtaaggatttcggtaaactgccgccc
gttttggatgtgccatacttgctggcaattcagcttgaatcctatcgcaattttctgcaa
gaaggtaaagcaattgcagagcgtggggaattaggtctgcatggggcctttaaatctgtc
tttccaatggtcagcttttccggcaacgcggcgctagaatacgtcgattaccgtttaggc
aagccagtatttgatgttaaagagtgtcagttgcgtggtgtaacctacgcggcacctttg
cgcgttcgtgtgcgactcatcatttatgataaagagtcgtctaacaaggccatcaaagac
atccgcgagcaagaagtctacatgggcgaaattccgcttatgacagacaatggtactttt
gttatcaatgggactgagcgtgtaattgtctctcaattgcaccgttcacctggtgtgttc
ttcgaccacgatcgtggtaagactcactcttcaggtaaattattacactcagctcgcgta
attccttaccgtggttcatggttggatttcgagtttgatccaaaagattgtgtgtttgtt
cgtattgaccgtcgtcgtaagttaccagcaactatcttgctgcgtgctttgggttatgac
accgaacaaatacttgagactttctttgaaacaacacgcttcttcttgaagcgagatggc
ttcgaaatggagctgattgctaaccgtttacgtggtgatactgcgttgtttgatattgct
gatgtgaacggtgaagtgattgttgaagaaggtcgtcgtattactgctaagcatattcgt
attatggaaaaagctggtcttgaacgtcttgctgtgccattagaatatatgcttggtaaa
gtgaccgcgaaaaatctggctcacccagcaacgggtgaattgattgcagaagccaacact
gagctgtctgttgatcttctagaggccttggtttcttccggtatcacagaagtggaaacc
ctgtatacaaatgatttggacaatggtccattcatttcagacacattgcgcattgatccg
accagcaatcagttagaggcgttggttgagatctatcgtatgatgcgtccaggtgaaccg
ccaaccaaagaatctgctgaaggtttattccaaggcttgttcttctctgaagatcgttat
gacttgtcttctgttggtcgtatgaagttcaaccgtcgtttaggtcgcgatgaggacaca
ggttctggcgttcttgataacgaagacattgtttcagttctaaaaaccttgctggatatt
cgtaacggtaatggcatggtggatgacattgaccaccttggtaaccgtcgcgttcgttct
gttggtgaaatggctgaaaaccaattccgtgttggtttggtacgtgttgagcgtgcagtg
aaagaacgtctttctatggcagaggcggatggtctaatgcctcaggatttgttgaatgct
aagccggttgcggcggcaatcaaagaattcttcggttctagccaattgtcacagtttatg
gaccaaaacaacccgttgtcagaagtaacgcacaagcgccgtgtttctgcattgggacct
ggtggtttgactcgagagcgtgctggctttgaggtacgtgacgtacacgctacacactac
ggtcgtgtttgcccaatcgaaacaccagaaggtccaaatatcggtctgatcaactctttg
tcaacctatgctcgcactaacagctatggtttcttggagacgccttaccgtaaggtagtt
gatggcaagattactgatgagacggtttatgtttcagcgattgatgaagcgaagtacgta
gttgcccaagcttctgcaaacgtggatcaagaaggtcgtttggttgatgacttggtacaa
gttcgtcacatgcacgaaaccactttgattccaaaagaaaaagtaaacttgatggacgta
tcaccacgtcaggttgtatctgttgcggcgtctttgattccgttccttgagcatgatgat
gcaaaccgtgccttgatgggatcgaacatgcaacgtcaagcagtgccaacacttaaggct
gataagcctgtggttggtacgggtatggagaaaaacgtcgcgaaagactcaggcgtttgt
atcgttgctcgtcgtggtggtgaaattgaatccgttgatgctagccgtatcgtcgttcgt
gttaactcagaagaaacaattgctggtgaagcgggtgtagatatctacaacctaacaaaa
tacgttcgttctaaccaaaatacctgcattaatcagcgtactttggtaatgaaaggtgag
aaggttgctgccggtgacatcatggctgacggcccttctgttgatatgggtgatttggcg
cttggtcagaacatgcgtattgctttcatgccttggaatggctttaacttcgaggactct
atcctagtatctgagcgtgttgtagaagaagatcgtttcacttctatccacattcaggag
ctcacttgtgtggctcgtgatactaaacttgggcctgaggaaatcacagctgatattcca
aacgttggtgaaggtgcgctatctaagctggattcttccggtatcgtttacatcggtgct
gaagtagagccgggtgatattcttgttggtaaagtgacgccaaaaggtgaaactcagctg
acgcctgaagagaagttattgcgtgctatctttggtgaaaaagcatcggatgttaaagac
acgtctcagcgtgttaaaacaggtactcgtggtactgtaattgatgtccaagtcttcact
cgtgatggtatcgagaaagatgagcgtgcgaaatccattgagaaatctcagttggatcaa
gtgcgtaaagacttgaacgaagaattccgtatcgtagaaaaagcgacctttgagcgtttg
gctgaagccctagtggggcaacaagcagaaggtggtccgggcttggcgcgtaatgcggtc
attactgaggacttcttagcgaacttagatcactctgagtggtttaaaattcgcgtagca
aacgaagaagctagtgagcagcttgaaaaagcgcaagcggctttgattgaacgtcgtaaa
gagctagatgcaaaattcgaagataaaaaacgtaagcttcaaacaggtgacgatttggca
cctggcgttcttaagatcgttaaggtttacgtggcgattaagcgtcgcattcagccaggt
gataaaatggccggccgtcatggtaacaagggtgtaatctctaaaatcatgccggtagaa
gacatgccatacgatgagaacggtgatccagtagacatcgtcttgaacccgctcggtgtt
ccttctcgtatgaacgtaggtcaggttttggaaactcacttgggtgctgcgtctaaaggc
ttaggtcgtaagatcaacgagatgctagcagtagaacgtgaaaaagcggaagctgttaaa
gaactgcgtggcttcttgaatgagatctacaacggttacgaaagtgacttgcgttgtgcg
cgtacggaagatctggacagcttcagcgacgaagaaatcttaaccttggcatctaacctt
actggtggtgtgccaatggcgtcaggtgctttcgatggtgcgaaagaagctgagatcaag
cgaatgttgcgtcttgcaggtctgaacgaaagtggtcaggtgactttgtacaacggtcgt
actggtgatgcctttgagcgtccagtaacggttggttacatgtacatgctgaaattgaac
cacttggttgatgacaagatgcacgcgcgttctactggttcatacagcttggttactcag
cagccgctgggtggtaaagcgcaattcggtggtcagcgtttcggtgaaatggaggtatgg
gcacttgaagcatacggtgctgcttatactctacaagaaatgttgacggttaagtcggat
gatgtgaatggtcgtactaagatgtataaaaacatcgttgacggcgatcatcgtatggaa
ccgggcatgcctgagtctttcaacgtgttggtcaaagagattcgctctcttggtatcgac
atcgagttggaaaacgaataa
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