Marinomonas sp. THO17: THO17_24430
Help
Entry
THO17_24430 CDS
T10670
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
math Marinomonas sp. THO17
Pathway
math03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
math00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THO17_24430 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
math03021
]
THO17_24430 (rpoC)
03400 DNA repair and recombination proteins [BR:
math03400
]
THO17_24430 (rpoC)
Enzymes [BR:
math01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THO17_24430 (rpoC)
Transcription machinery [BR:
math03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
THO17_24430 (rpoC)
DNA repair and recombination proteins [BR:
math03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
THO17_24430 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
FTO_CTD
DUF6285
Motif
Other DBs
NCBI-ProteinID:
BFM50280
LinkDB
All DBs
Position
2648576..2652778
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLGLLKSQGQSDEFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVALSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLIMDMTLRDIERVLYFESFIVIDPGMTTLEKGQLLNDEQYFEALEEFGDEFDARM
GAEAVQMLLRDLDMPEEINRMREELNSTNSETRIKKLSKRLKLVEAFYHSGNNPEWMVLD
VLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPS
LRLHQCGLPKKMALELFKPFIFSKLELRGMATTIKAAKKMVERETPEVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMAFSDIKEVHRAYGAK
QVDLHAKVKVRINQVDTTLEGEKVASTFIADTTVGRALLFDIVPDGLPFSVVNQPMKKKA
ISNLINECYRKVGLKESCIFADQLMYTGFAYATASGSSVGVDDFVIPPEKAEIIAKAEEE
VKEIEYQYADGLVTQGEKYNKVIDLWSRTNEAVTEAMMNNLAKETTVNKEGEEVEQQSFN
SVYMMADSGARGSVAQMRQLGGMRGLMAKPDGSIIETPITANFREGLSVLQYFTSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITETDCGATNGIVVNAMIEGGDVVVPLGQRVL
GRVVAQDVNDAKGNLVLPAGTLIDEHDVRTIEAAGVDEMLIRSVITCETRHGVCAKCYGR
DLARGHEVNIGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQVKSAGTVRFH
KMKSIERDTGHLVVASRSSELAIADEAGREKERYKLPYGAVLSVREGDTVEAGQVVANWD
PHTHPIVSEMEGRLEFSGMEENVTIRRQSDEMTGLTTIEVLEMKDRPSAGKDLRPMISVV
DADGNPVHIPGTDSPVQYMLPEKALLSLDHGATVKSGEVLARIPQESQGNKDITGGLPRV
ADLFEARRPKDPAVMAEATGVVSFGKETKGKIRLVITPQDGSDPIETLIPKWRQINIFDG
EEVAKGEIIADGPLSPHDILRLQGVEALADYITNEVQEVYRLQGVVINDKHIEVIVRQML
RKVEVGESGDTDLIQGDQVELTQLLDANEKAEAEGKFPAKFERVLLGITKASLATESFIS
AASFQETTRVLTEGAVTGKKDHLRGLKENVVVGRLIPAGTGLAYHNERKKKKDSAQLASE
TGPTVSASDVEEALSAALKD
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttattaggtcttctaaaatcacaaggacaatctgacgagtttgatgcgatc
cgcattggcttggcatcaccagatatgattcgttcatggtcttacggtgaagttaaaaag
cctgagaccatcaactaccgtacgttcaagcctgagcgtgacggtttgttctgtgccaaa
atctttggtcctatcaaggactacgaatgcttgtgtggcaaatacaagcgtttgaaacac
cgtggtgttatttgtgagaagtgtggcgttgaagtggctctgtctaaagtgcgtcgtgag
cgcatggggcatattgagcttgcttcgccagtggctcacatctggttcttgaaatctttg
ccatctcgtatcggtcttatcatggatatgaccttgcgtgatattgagcgtgttctttac
ttcgaatctttcatcgtgatcgatccaggtatgacgacgcttgaaaaaggccaattgcta
aacgacgaacagtacttcgaagcactggaagagtttggtgacgagtttgatgcccgtatg
ggtgcggaagcggttcaaatgctactacgcgatttggacatgccagaagaaatcaacaga
atgcgtgaagagctaaacagcacgaattctgaaactcgtatcaagaagctgtctaagcgt
ctgaaattggttgaagctttctatcattctggtaacaacccagagtggatggtgcttgat
gtattgccagttttaccaccagatctacgcccattggtgccgctagaaggtggtcgtttt
gcgacatctgatttgaacgatttgtaccgtcgagtaatcaaccgtaacaaccgtttgaag
cgtctactagagctatcggctccagacatcatagtacgtaacgaaaaacgtatgttgcaa
gagtctgttgatgctttgcttgataacggtcgtcgcggtcgtgctatcacgggttcgaac
aagcgtccattgaaatctttggcagacatgatcaaaggtaagcaaggtcgtttccgtcag
aaccttcttggtaagcgtgtagactactctggccgttctgtaatcacagtaggtccatct
ttgcgtctacatcagtgtggtcttcctaagaagatggcattggaactatttaaaccattt
atcttctctaagcttgagttgcgcggtatggcgacaaccatcaaagcggctaagaaaatg
gtagagcgtgaaacacctgaggtgtgggatattcttgatgaagtgatccgcgaacacccc
gtaatgcttaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaacctatg
ttgattgaaggtaaagcgatccaattgcacccgttagtttgtgcggcgtacaacgctgac
tttgacggtgaccaaatggcggttcacgttcctttgacaatcgaagctcagcttgaagcg
cgtgctttgatgatgtcaacgaacaacatcctatcaccagcaaacggtgagccgattatc
gtgccttctcaggacgtggtattaggcttgtactacatgacgcgtgagaaaatcaatgcc
aaaggtgaaggcatggcgttctctgacatcaaggaagtacaccgtgcatacggcgcaaaa
caagttgatttgcatgccaaagtgaaagtccgtattaaccaagttgatacgacgctagaa
ggtgaaaaagttgcttctactttcattgcagataccacagttggtcgtgcattgttgttt
gatatcgtaccagatggtcttccattctctgtggttaaccaaccaatgaagaagaaggcg
atctctaacctgatcaatgagtgttaccgtaaagtgggcttgaaagagagctgtatcttt
gctgaccaattgatgtacacaggttttgcgtacgcaactgcatcaggttcttcggttggt
gttgacgacttcgtaattccgccagaaaaagcagaaatcattgctaaagcggaagaagaa
gttaaagaaatcgaatatcagtacgctgatggtttggtaactcagggcgagaaatacaac
aaggtaattgacttgtggtctcgtactaacgaagccgttactgaagccatgatgaacaac
ttggcaaaagaaaccacagtaaacaaagagggtgaagaggttgagcaacaatccttcaac
tcggtttacatgatggccgactctggtgcccgtggtagtgtggctcagatgcgtcagttg
ggtggtatgcgtggtttgatggcgaaaccagatggttccatcatcgaaacgccgatcact
gcgaacttccgtgaaggtctatcggtacttcagtactttacctccactcacggtgctcgt
aagggtcttgccgataccgctttgaaaacagcgaactccggttacttgacgcgtcgtcta
gtagacgttgcgcaagacttggtaatcacagaaacagactgtggcgcgaccaatggtatc
gtggtaaatgccatgatcgaaggtggtgacgtagttgttccactaggtcagcgtgtgttg
ggtcgtgtggtagcacaagacgtaaacgacgccaaaggtaacctagtattgccagcaggt
accttgatcgatgagcacgatgtgcgcacgattgaagcggctggtgtagacgaaatgtta
atccgttctgttatcacttgtgaaacacgccacggtgtgtgtgctaagtgttacggtcgt
gatttggcccgtggtcatgaagtgaatatcggtgaagcgattggtgttgttgcagcgcag
tctatcggtgagcctggtactcagttgaccatgcgtactttccatatcggtggtgcggct
tctcgagcgtctgcagtagacagtgttcaagtgaagagtgccggtacagtacgtttccac
aaaatgaagagtatcgagcgtgatacgggtcatttggtagtggcatctcgttcttctgaa
ttggcaattgctgatgaagcaggtcgtgagaaagagcgttacaaacttccttacggtgcg
gtattgagcgtgcgtgaaggggacacagtagaagctggccaagtggttgctaactgggat
ccacacactcacccaatcgtatctgagatggaaggtcgcctagaattcagcggtatggag
gagaatgtaactattcgccgtcaatccgatgagatgactggtttgactaccatcgaagta
ttggaaatgaaagatcgcccatctgcaggtaaagacttgcgtccaatgatctcggttgtt
gatgcagatggtaatccagtgcatatccctggtacagactctccagtacagtacatgttg
cctgagaaagcgctactgagcttggatcatggtgcaacagttaagtctggtgaagtattg
gcgcgtattccacaagaatcgcaaggtaacaaggatatcaccggtggtctgccacgagtg
gctgacctatttgaagcacgtcgtcctaaagaccctgctgttatggcagaagcgacaggt
gtggtgagcttcggtaaagaaactaagggtaagattcgtttggttattacaccacaagat
ggcagtgacccaatcgagactttgatcccgaaatggcgtcaaattaacatcttcgacggt
gaagaagtggcgaaaggtgaaatcattgccgatggtcctctaagccctcacgatattttg
cgtcttcaaggtgtggaagcgttggctgactacatcacgaacgaagtacaagaagtatat
cgcttacaaggtgtagtaattaacgataaacacatcgaggttatcgttcgtcaaatgcta
cgtaaagtcgaagtgggtgagtctggtgatacagatctgatccaaggtgaccaagttgag
ttgactcaactgttggatgcaaacgaaaaagcggaagcagaaggtaaattccctgctaag
tttgagcgtgtgcttctaggtattaccaaagcttctttggcaactgagtccttcatctct
gctgcgtctttccaagagacaactcgtgtcttgaccgaaggtgcggtgacaggtaagaaa
gaccacttgcgtggcttgaaagaaaacgttgtagtaggtcgtctgatccctgcgggaaca
ggtttggcttaccacaatgagcgtaagaagaagaaagattctgcgcaattagcaagtgaa
actggtcctacagtaagtgcatctgatgttgaagaagcattaagtgccgcactaaaagac
taa
DBGET
integrated database retrieval system
