Marinomonas sp. THO17: THO17_29430
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Entry
THO17_29430 CDS
T10670
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
math Marinomonas sp. THO17
Pathway
math03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
math00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THO17_29430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
math03019
]
THO17_29430
Enzymes [BR:
math01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THO17_29430
Messenger RNA biogenesis [BR:
math03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THO17_29430
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_25
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BFM50780
LinkDB
All DBs
Position
complement(3192025..3193395)
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AA seq
456 aa
AA seq
DB search
MSFNQLGLSAPILKAIEEQGYSTPSPIQAQAIPDILEGQDVMAAAQTGTGKTAGFTLPLL
ERLSAGKLANHNQVRALVLAPTRELAAQVGESVKQYGQHLPLKSCVVFGGVKINPQMMAL
RRGADILVATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIHDIKRVLAILPKKRQ
NLLFSATFSQEIRDLAKGLVNHPVEISVTPRNATAKSVEQWLHPVDKKQKIHLLIDLIAQ
GQWQQALVFSRTKHGANKITKQLEDAGIRASAIHGNKSQGARTRALSDFKEGRIRILVAT
DIAARGIDIEELPHVVNFDLPDVAEDYVHRIGRTGRASATGQAISLVSADELDQLKAIER
LTQKLIERRYVDDFFPTHMLPDTTLDTRPIKPKKPKKPKKPKTGNAAANSANSNRKAKKP
APKADVTPGPGLRSKPLAPARRKRKPNSAANKPSNG
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcaatcaactgggtctgtcagcaccgattcttaaagccattgaagaacaaggc
tacagcacaccctcgcccattcaagcgcaagccattccagacattttagaaggtcaagac
gtcatggccgccgcgcaaacgggtactggaaaaaccgctggtttcaccttgcctctttta
gaaagattaagtgcgggcaaactggccaaccacaaccaagtgcgtgcgctggtattagca
ccaacccgtgaattggctgcgcaagtaggtgagagcgtaaaacagtacggtcagcatttg
ccgttaaaatcctgcgtggtatttggtggtgtcaaaatcaacccacaaatgatggccttg
cgccgtggtgcagacatactagtcgccacaccgggccgcttattggatttgtaccaacaa
aacgccatcaaatttgaccaacttgaagtcttggtattggatgaagcggatcgcatgttg
gacatgggcttcattcacgacatcaaacgcgtgctggcgattttgccgaaaaagcgccaa
aaccttcttttctcagcgactttctcgcaagagattcgagatctggccaaaggtttagtg
aaccatcctgtggaaatttccgttacaccacgaaatgcgacagcaaaatccgttgaacaa
tggctacacccagtggataaaaaacaaaaaatccacttattgatcgacttgattgcccaa
gggcaatggcaacaagccttggttttttctcgtaccaaacacggtgccaacaagatcacc
aaacaattagaagacgctggcatccgcgccagtgccattcatggcaacaaaagccaagga
gcgagaacccgtgccttatcagactttaaagaaggccgtattcgtattttggtcgccacc
gacattgccgcacgcggcattgatatcgaagagttacctcatgtggtgaatttcgattta
cctgatgtggcggaagactatgttcatcgtattggtcgtacaggtcgagccagcgccact
gggcaagccatctctttagtatctgctgacgaactggatcaactcaaagccattgagcga
ctcacccaaaagctcatcgagcgtcgctatgttgatgactttttcccaacccatatgttg
ccagataccacactggatacgcgccctattaagccgaaaaaaccgaaaaagcctaagaag
cccaaaacaggcaatgcggcggccaattcagctaacagcaatagaaaagcgaaaaagcca
gcgccaaaagccgatgttacgcccggcccgggattacgcagcaaacctttggcaccagct
agacgcaagcgcaagccaaacagcgcagccaacaaaccaagcaatggataa
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