Marinomonas sp. THO17: THO17_29780
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Entry
THO17_29780 CDS
T10670
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
math Marinomonas sp. THO17
Pathway
math02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
math00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
THO17_29780 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
math03021
]
THO17_29780 (rpoD)
Transcription machinery [BR:
math03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
THO17_29780 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
BFM50815
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Position
complement(3232432..3234273)
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AA seq
613 aa
AA seq
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MPDTQQSRLKELISKGKEQGYLTFTEVNDHLPDDLSDPEQVEEIIAMINDMGITVSEYAP
DKESLLMEEGDTTDEAAAEEAAAALAAVEGDITRTTDPVRMYMREMGTVELLTRAGEIAI
AKRIEEGTREVMAAISYFPGAVDVLLDAYAKVQEEEGRLSDIFSGFIDGDGEEPIFEDNA
DELPIEDEAEETDNDDDDDDSEASEEETDNGPDPEETALRFNEISRIYDELKVLLETRDR
QDALVLSKQEELSIAFAPIKLVPKLFDELIDRVRSRMEKVREQERLIMQVCVRKSGMPRT
EFLKRFPSNETNPDWLQEQIALGADYSSALEENEAEFMRSQRKLRAVAKDTDLTIAELKE
INRRISIGETRARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREATP
EELAARMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDDGAESPIDIATIEGL
RESTTTVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEHLRSFLDE
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgccagacactcaacagtcacgtcttaaagagttgatctctaagggtaaagaacaaggt
tacctaacttttacagaagttaatgaccacctccccgatgacctttcagacccggagcag
gtcgaagaaatcattgccatgatcaatgacatgggcatcacggtttcagagtatgctcca
gataaagaaagccttcttatggaagaaggcgacacaacggatgaagcggctgctgaagaa
gccgctgccgcccttgctgcggtagaaggcgatattactagaacaacagaccctgtacga
atgtatatgcgtgaaatgggtacggttgagctattaactcgcgctggtgagattgccatt
gcgaaacgtatcgaagaaggtacacgcgaagtcatggcggccatttcttacttcccaggt
gccgttgatgtattgcttgatgcctacgctaaggtgcaggaagaagaaggtcgtttaagc
gatatcttcagtggattcatcgacggtgacggcgaagagcccatatttgaagacaatgct
gatgaattaccaatcgaagacgaagcagaagaaactgataacgacgacgatgacgacgat
tctgaagcaagcgaagaagaaactgacaacggcccagatccagaagagacagcccttcgc
tttaatgagatctcacgaatttacgatgaactgaaagtcttgttggaaactcgtgatcgc
caagatgctctggtgttaagcaaacaagaagaactcagtattgcgtttgccccaatcaag
ttggttccaaaactctttgatgagctgattgatcgtgtgcgttctcgaatggaaaaagtt
cgcgagcaagaaagattgatcatgcaagtttgtgtgcgtaaatctggtatgccaagaacc
gagttcttaaagcgcttcccaagtaatgaaactaatcctgattggttacaagagcaaatt
gctttaggagctgactactctagcgcgctagaagaaaacgaagcagaattcatgcgcagc
cagcgcaagttgcgtgctgttgcgaaagacacagatttgactatcgctgagctaaaagaa
attaaccgccgtatttcgattggtgaaactcgtgctcgccgtgctaagaaagaaatggtt
gaagccaacttacgtttggtgatttccattgctaaaaagtacactaaccgtggcctacaa
ttcttagatctgatccaagaaggcaacataggtttgatgaaagccgtggataagttcgaa
tatcgacgtggttataagttctcaacttacgcaacttggtggattcgtcaggcgatcact
cgttcgattgctgaccaagcacgtactattcgtattccagtacacatgatcgaaaccatc
aacaagctgaaccgtatctctcgtcagatgctgcaggagatgggtcgtgaggcgacacca
gaagaactagctgctcgtatggatatgcctgaagacaagattcgtaaagtcttgaagata
gccaaagagcctatttctatggaaacacctatcggtgacgatgaagattcgcatcttggc
gatttcattgaagacgatggcgcagaatcacctatcgacattgcgacaatcgaagggtta
cgtgagtctacgaccactgttcttgctggcttaactgcccgtgaagcaaaggtactaaga
atgcgctttggtatcgacatgaacacagatcacactctggaagaagtcggtaaacagttt
gatgtaacgcgtgagcgtattcgtcagattgaagcgaaagcactacgtaaactccgtcat
ccaagtcgctcagagcatttacgcagtttcttggacgagtaa
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