Mesocricetus auratus (golden hamster): 101823609
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Entry
101823609 CDS
T08306
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
maua
Mesocricetus auratus (golden hamster)
Pathway
maua03013
Nucleocytoplasmic transport
maua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
maua00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101823609 (Upf1)
03015 mRNA surveillance pathway
101823609 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maua03019
]
101823609 (Upf1)
Enzymes [BR:
maua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101823609 (Upf1)
5.6.2.5 RNA 5'-3' helicase
101823609 (Upf1)
Messenger RNA biogenesis [BR:
maua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101823609 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
101823609 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101823609
NCBI-ProteinID:
XP_040597985
LinkDB
All DBs
Position
Unknown
AA seq
1139 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGVPGGA
GAGGAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDKGSGFEQEADLTQRPDYGDEIAIELRSSV
GAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQL
PKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLV
CAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQ
LKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDEST
QATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQ
VQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIAS
SGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQ
EVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKAL
SKQPLWNHLLSYYKEQKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDARE
AIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFG
QANGPAAGRGTPKSKTGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGALTQGYV
SMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacgctcaccttcttggacactgaggag
gccgagctgcttggcgccgacacccagggttccgagttcgagttcaccgacttcaccctt
cccagccagacgcagacgccccccggcggccccggcggcgcgggagtcccgggcggagcg
ggcgcaggcggcgcggccggccagctcgacgcgcaagttggacccgagggcatcttgcag
aatggggctgtggatgacagtgtggccaagaccagccaactgctggctgagctgaacttt
gaggaagatgaagaagacacgtactacaccaaggacctcccagtccacgcctgcagttac
tgcggaatccatgatcctgcgtgcgtggtttattgcaataccagcaaaaagtggttctgc
aacggccgaggaaatacttctggcagccacatcgtgaatcacctggtgcgggccaaatgc
aaggaggtgacgctgcacaaggatgggccgctgggcgagacggtgctggagtgctacaac
tgtggctgccgcaacgtcttcctgctcggcttcatccctgctaaggccgactcggtggtg
gtgctgctgtgcaggcagccctgtgccagccagagcagcctgaaggacatcaactgggac
agctcccagtggcagcccctgatccaggaccggtgcttcctgtcatggctggtcaagatt
ccctcagagcaggagcagctgcgggcacggcagatcactgcacagcagatcaacaagctg
gaggagctttggaaggaaaacccttcagctaccctggaggacctggagaagccaggcgtg
gatgaggagccccagcacgtgctcctgaggtacgaggatgcttaccagtaccagaacatc
ttcgggcccctggtcaagctagaggccgactacgacaagaagctgaaggagtcacagact
caagataacatcactgtcaggtgggacctgggccttaacaagaagagaatcgccttcttc
actttgcccaagactgactctggtaatgaggatttagtcataatttggttaagagatatg
cggctcatgcagggtgatgagatctgtctgcggtacaaaggagacctagcgcccctatgg
aaggggattggccatgtcatcaaggtccctgacaagggtagtggctttgagcaggaagca
gacttaactcagcggccagattacggtgatgagattgcgatagagctccggagcagcgtg
ggtgcgcccgtggaggtgacccacaacttccaggtggattttgtgtggaagtccacctct
ttcgacaggatgcagagtgcactgaagactttcgctgtggacgagacctctgtgtcaggg
tacatctaccacaagctgctgggccacgaggtggaagacgtggtcatcaagtgccagctg
ccaaagcgcttcacggctcaggggctgcccgacctcaaccactctcaggtgtatgctgtg
aagaccgtgctgcagagaccgctcagcctcatccagggccctccaggcacaggcaagacc
gtgacgtctgccactattgtctaccaccttgctcggcagggcaatgggcctgtgctggtg
tgcgcccccagtaacatcgctgtggaccagctcaccgagaagatccaccagacgggactg
aaggttgtgcgcctctgtgccaagagccgcgaggccattgactcccccgtgtccttcttg
gctctgcacaaccagatcaggaacatggacagcatgcccgagctgcagaagctgcagcag
ctgaaggacgagacgggcgagctgtcgtctgcggacgagaagcgctaccgggcgctcaag
cgcacagctgagagagagctgctcatgaacgcagacgtcatctgctgcacctgtgtgggt
gccggtgacccgaggctggccaagatgcagttccgttccatcctcattgatgagagcacc
caggccactgagccggagtgcatggtgcctgtggtccttggggccaagcagctgatcctc
gtgggcgaccactgccagctgggcccggtggtgatgtgcaagaaggcggccaaggccggg
ctgtcgcagtcgctgttcgagcgcctggtggtgctgggcatccggcccatccgcctgcag
gtgcagtaccgcatgcaccctgcgctcagcgccttcccgtccaacatcttctacgagggc
tcgctgcagaacggcgtcactgcagcggatcgtgtcaagaagggctttgatttccagtgg
ccacagcctgacaagcccatgttcttctacgtgacacagggccaggaggagattgccagc
tccggcacgtcctacctcaacaggacggaggcggccaacgtggagaagataactacgaag
ctgctgaaggcaggcgccaagcccgaccagattggtatcatcacgccctacgagggccag
cgctcctacctggtgcagtacatgcagttcagtggctccctgcacaccaagctctaccag
gaagtggagattgccagtgtggacgccttccagggccgggagaaggacttcatcatcctg
tcctgcgtgcgcgccaatgagcaccagggcattgggttcctgaacgacccccgccgtctc
aacgtggccctcaccagagcgaggtatggcgtgatcattgtgggcaacccaaaggccctg
tcgaagcagcccctgtggaaccacctgctgagctactacaaggagcagaaggccctggtg
gaggggccgctcaacaacctgcgggagagcctcatgcagttcagcaagccccgcaagctc
gtcaacaccgtcaacccgggggcccgcttcatgactacagccatgtacgatgcccgagag
gccatcatcccggggtctgtctatgaccgcagcagccagggccggccgtcaaacatgtac
ttccagacccacgaccagattggcatgatcagcgcagggcccagccatgtggctgccatg
aacatccccatccccttcaacttggtcatgcctcccatgcccccacctgggtactttgga
caggccaacgggccagctgctggccggggcaccccgaaaagcaagactggccgtggaggc
cgccagaagaaccgcttcgggcttcctgggcccagccagactacccttcccaacagccag
gccagccaggatgtggcctcacagcccttttcacagggggccctcacacagggttatgtg
tccatgagccagccctcccagatgagccagcccggcctctcccagccagagctgtcccag
gacagctacctcggtgatgagtttaaatcacagattgacgtggcactctcccaagactcc
acgtaccagggagagcgggcataccagcacggcggggtcaccgggctgtcccagtactag
DBGET
integrated database retrieval system
