Mesocricetus auratus (golden hamster): 101828569
Help
Entry
101828569 CDS
T08306
Symbol
Col15a1
Name
(RefSeq) collagen alpha-1(XV) chain isoform X1
KO
K08135
collagen type XV alpha
Organism
maua
Mesocricetus auratus (golden hamster)
Pathway
maua04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
maua00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101828569 (Col15a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
maua00535
]
101828569 (Col15a1)
Proteoglycans [BR:
maua00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
101828569 (Col15a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
101828569
NCBI-ProteinID:
XP_040594552
EnsemblRapid:
ENSMAUG00000000509
LinkDB
All DBs
Position
Unknown
AA seq
1396 aa
AA seq
DB search
MAPRRTAQGQRPRWLLSIISSALLSAVLQTRTATGSAAQDHLDLTELIGVPLPSSVSFVT
GYGGFPAYSFGPGANVGRPARTLIPPTFFRDFAISVAVKPSSSQGGVLFAVTDAFQKVIY
LGLRLSRVEDGHQRVILYYTEPGSHVSREAAAFSVPVMTNRWNRFAVTVQGEEVALLMDC
EELGHVLFQRSSRPLMFEPSAGVFVGNAGATGLERFTGSIQQLTIYTDPRTPEELCEAQE
SSASGEASGLQEMDEVAEIMEAVTYTQTPPKEVHVDPISMPPTSSSPAEDTEFSGEPVPE
GTPETNLSIIGHSSPEQGSGEILNDTLEVHVVDGDPSTDDGSGNGALLNVTDGQVLSATA
TEEAKVPVTTTLKAETGSVPTGSPTLAASTQNSREVATLGPESEENLTAEASGDGEVPAS
TAGDAEAATMPATEPPLSLLSQKPRQEATLGPNGEEWLTPAVSKEPLGAFEEEEASGTAI
DSLDAFTPTMALEKASGTPADIQNTLTPTVALEQASGTPADIQDALTPTVVLEQASRGPT
DTQDALPATVAPEQVFTAAPTDGERQAASTEEAEEEGSDSILPSGPPLPTPTVAPERPVT
PVAVEAEGSGHVWGLDVGSGSGDIVSNEDLLRGPPGPPGPPGSPGIPGKPGTDVFIGPPG
SPGEDGATGEPGPPGPEGQPGLDGASGKPGMKGEKGARGPNGSVGEKGDPGNRGLPGPPG
KNGQVGTPGVMGPPGPPGPPGPPGPGCTTELGFEDIEGSGDIQLLSKPRISGPASPSGPK
GEKGEQGPKGERGMDGTSTVGPPGPRGPPGRVQVLSSSLINITNGSMNFSNIPELVGPPG
PDGMPGLPGFPGPRGPKGDTGVPGFPGLKGEQGEKGEPGAILTGDIPLEMVKGRKGEPGM
HGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGAKGDRGIMMPGPPGLPGPPGPPGPP
GAVVNIKGAVFPIPARPHCKTPVGTAHPGDPELVTFHGVKGEKGSWGLPGSKGEKGDQGA
QGPPGPPVDPAYLRHFLHSLKGENGDAAFRGESSNNLLVSGPPGLPGHPGLVGQKGEAVV
GPQGPPGIPGLPGPPGFGRPGVPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPGSR
NLVTALSDMGDMLQKAHLVIEGTFIYLRDSAEFFIRVRDGWKKLQLGELIPIPADSPPPP
ALSSNPYQPQPPLNPILSANYERPVLHLVALNTPVAGDVRADFQCFQQARAAGLLSTFRA
FLSSHLQDLSTVVRKAERLSLPVVNLKGQVLFKNWDSIFSGDGGQFNTHIPIYSFDGRDV
MTDPSWPQKVVWHGSNPHGVRLVDKYCEAWRTTDMAVTGFASPLSTGKILDQKAYSCANR
LIVLCIENSFMTDARK
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atggcacccaggaggaccgcgcagggccagcgcccgcggtggctgctctccatcatctcc
tcagcgctgctctccgctgtactgcagacgcgcaccgcaacaggctcagctgcccaggac
catctggacctcacagagctcattggtgtccccttgccctcatctgtgtcctttgtcacg
ggctatggtggtttcccggcttacagctttgggcctggtgccaatgttggccgcccagcc
aggaccctcatcccgccgaccttcttcagggacttcgccattagtgtggcggtgaagccc
agtagttcccaaggaggtgtgctcttcgccgttactgatgctttccagaaagtcatctac
ctgggcctgcggctttccagggtggaggacggccaccagcgggttatcctgtactacacg
gaaccaggctcccacgtgtcccgtgaagcggctgccttttcagtgcctgtgatgaccaac
aggtggaatcgttttgctgtgaccgtccagggcgaggaagtggcccttctcatggactgt
gaggagctcggccacgtccttttccagagatcttcccggcctctgatgttcgagcccagt
gccggtgtatttgtaggcaatgcaggagccacgggcctggagagatttacgggctccata
cagcagcttaccatctacacggaccccaggacccccgaggagctgtgtgaagcccaagag
tcctcggcatctggagaagccagtgggcttcaggagatggatgaagtcgctgagatcatg
gaagctgtcacctacactcaaaccccgcctaaagaagtacacgttgatcccataagcatg
cctcctacttcatcctctcctgctgaggacacggagttttccggggaacctgtgccagaa
ggaaccccagaaaccaacttgagcatcattgggcatagcagccctgagcaagggtctggt
gagattctgaatgacacactggaggtccatgttgtggatggggaccccagtactgatgat
ggttcagggaatggggccttgctgaatgtcactgatggtcaggtgctatcagcaacggcc
actgaggaggccaaggtgcctgtcactaccaccctgaaagcagagactggcagtgttcct
actgggagccccaccctggccgcgtccacccaaaactccagggaagtggccactctgggt
cctgagagtgaagaaaatctgacagccgaagcatcaggggatggtgaggtgcccgccagc
actgctggggacgcagaggccgccacgatgcctgctacagagccacctctgtccctgcta
agccagaagccaaggcaagaggccactctgggtccaaacggtgaagaatggctaacccca
gctgtgtctaaagaaccccttggcgcttttgaggaagaagaagccagcgggactgccatt
gacagcctggatgccttcacacccacaatggcccttgagaaagccagcgggacccctgca
gacatccagaatactctcacacccacagtggcccttgagcaagccagtggaacccctgca
gacatccaggatgctctcacacccacggtggtccttgagcaagccagcaggggtcctaca
gacacccaggatgctctcccagccacagtggctcctgagcaagtgtttactgctgcacca
actgatggagaacgccaggcggcatccaccgaggaagctgaggaggagggttccgacagc
atactccccagtgggcctccactacccacacccacagtggctcccgagaggccggtcact
ccggtagcagtggaggctgaaggctcaggccatgtttggggcttggatgtgggctcaggc
tctggagacattgtgagcaatgaggatttgttgagaggtcctccgggccctccaggcccc
cctggatcacctgggattccaggaaaaccaggaacagatgttttcataggaccccctggc
tctcctggagaggacggagctactggtgagccaggacctccgggccctgagggacagcct
ggacttgatggagcctctggcaagcctgggatgaaaggagagaagggagcaagaggacct
aatggctctgtcggcgagaagggagaccctggcaatcgaggcttgccagggcccccgggg
aaaaatggacaagttggcactcctggggtcatgggaccaccagggcctcctggacccccg
ggacccccaggccctggatgtacaaccgaacttggatttgaggacatcgaaggctcgggg
gacatccagctgctgagcaaacccagaatctcgggacccgcttctccaagtggtcccaaa
ggagagaaaggagagcaaggacccaagggtgaacggggaatggatggaaccagcactgtg
ggaccccctgggcccaggggaccacctgggcgtgtccaggtcctgtccagttctttgatc
aacatcactaatggatccatgaatttctccaacattcctgagcttgtgggacctccgggg
ccggatggtatgcccgggctaccaggatttccaggccccagaggaccaaaaggtgacacc
ggtgtgcctggattcccaggtctaaaaggagaacagggcgagaagggagagccgggtgcg
atcctgacaggggacattcctctggaaatggtgaaggggagaaagggtgaacctggaatg
catggagccccaggacccatgggacccaagggaccaccaggtcataaaggagaatttggc
ctcccgggacgacctggtcgtccaggattgaatggtctcaagggtgccaaaggagatcga
gggatcatgatgccaggtccacctggcctacctggacccccaggacctccaggaccccct
ggagctgtggttaacatcaaaggtgctgttttcccaatacctgcccggccacactgcaag
actccagttggtacggctcaccctggagacccagagcttgtcactttccacggtgttaaa
ggagagaaaggttcctggggtcttcctggttcaaaaggagaaaagggggaccaaggagcc
caaggaccaccaggccctccggttgatcccgcttacctgagacattttctccacagcttg
aagggagagaatggagatgcagcattcagaggagagtccagcaacaacctccttgtctct
gggcctccaggcctaccgggacacccaggcctggttggacagaaaggagaggctgttgtg
gggccccagggccccccaggaattccaggtctgcctgggccacctggctttgggagacct
ggtgtccctggaccaccgggaccccctgggccaccaggacctcctgccatcctgggtgca
gctgtggcccttccaggcccgcctggccctccgggacagccaggactcccaggatccaga
aacttggtcacggcactcagcgacatgggtgacatgttgcagaaagctcacttggtcata
gaagggacgtttatctacctgagggacagtgcagagttcttcatccgtgtccgagatggc
tggaaaaaattacagttgggagaactgatccccatccctgctgacagccccccaccgccg
gcgctttccagcaatccataccagccacagcctccgctgaaccccattttaagtgccaat
tatgagaggcctgttctgcatctggttgctctgaacacaccggtggctggagacgtccgg
gctgatttccagtgcttccagcaggccagggctgcagggctgctgtccacgttccgagcg
ttcctgtcatcccacctgcaggacctctccacggttgtgaggaaagcagagagactcagc
cttccagttgtgaacctcaagggccaagtgctttttaaaaattgggactcaatattttct
ggtgatggaggtcagttcaacacccacattccgatatactcttttgatggtcgagacgtg
atgaccgatccttcttggccccagaaagtcgtttggcatggatccaacccccatggtgtc
cgtcttgtggataagtactgtgaagcctggcgaaccacagacatggcagtaacgggattt
gcctccccactgagcacagggaagattctggaccagaaagcttatagctgtgctaatagg
ctaatcgtcctgtgtatcgaaaacagcttcatgacagacgctaggaagtaa
DBGET
integrated database retrieval system
