Mesocricetus auratus (golden hamster): 101829856
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Entry
101829856 CDS
T08306
Symbol
Lig1
Name
(RefSeq) DNA ligase 1 isoform X2
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
maua
Mesocricetus auratus (golden hamster)
Pathway
maua03030
DNA replication
maua03410
Base excision repair
maua03420
Nucleotide excision repair
maua03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
maua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101829856 (Lig1)
03410 Base excision repair
101829856 (Lig1)
03420 Nucleotide excision repair
101829856 (Lig1)
03430 Mismatch repair
101829856 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
maua03032
]
101829856 (Lig1)
03400 DNA repair and recombination proteins [BR:
maua03400
]
101829856 (Lig1)
Enzymes [BR:
maua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101829856 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
101829856 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
101829856 (Lig1)
DNA replication proteins [BR:
maua03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
101829856 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
101829856 (Lig1)
DNA repair and recombination proteins [BR:
maua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
101829856 (Lig1)
NER (nucleotide excision repair)
Other NER factors
101829856 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
101829856 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
101829856
NCBI-ProteinID:
XP_005086802
UniProt:
A0A1U7R3K6
LinkDB
All DBs
Position
Unknown
AA seq
956 aa
AA seq
DB search
MSVESQVKGEVGSQQGDPRGLEVQLMRRKEQERKGENSAATMQRSIMSFFQPTKEGKAKK
PEKETADSIKEKEPPPKVALKERNQVVPESDSPVKKPGRKAAQVLSSEGEEEDEAPGTPT
VQKSVSDSKQSSPPSPDTCPENSPFLSSPSMDISPSGFPKRRTARKQLPKRTIQDTVEEQ
NEDKDRAAKKRKKEEEAQTPMESLTETRDVKQKEEKEAGQPLEPAKSPETVTQTKTENIP
VCKDGVKREPQEEEQSKPPSRGAKTLSSFFTPRKPAVKAKEKREESGTPGKEETKGTLDP
ANYNPSKSNYHPIEDACWKHGQKVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVALS
PPDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEVAEKGDVGLVA
ENSRSTQRLMLPPPPLTTSGVFTKFCDIARLTGSASMTKKLDIIKGLFVACRHSEARFIA
RSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDAGKGKTTEARKMWLEEQGMIL
KQTFCEVPDLYRIIPVLLEHGLESLPEHCRLSPGVPLKPMLAHPTRGVSEVLKRFEEVDF
TCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAV
AWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLIRQPLSRRRQLLR
ENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWL
KLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDE
ELEEHHQSLKALVLPTPRPYVRIDGAVAPDHWLDPSVVWEVKCADLSLSPIYPAARGLVD
KEKGISLRFPRFIRVREDKQPEQATTSDQVACLYRKQSQIQNQHNSDLDSDLEDCY
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgagagtcaggtcaaaggtgaggtaggctcccagcaaggggacccgagaggt
ctggaggtacaactaatgagaagaaaagaacaagagaggaaaggggagaactctgctgcc
accatgcagagaagtatcatgtcatttttccaacccacaaaagagggtaaagcaaagaag
ccggagaaggagacagcagacagcatcaaagagaaagaaccccctccaaaggtggcattg
aaggagaggaatcaagtagtccctgagagcgactctccagtgaagaagccaggaaggaag
gcagcccaggtcctaagcagcgagggggaggaggaagatgaagctcctggcacccctaca
gtccagaagtctgtgtcagactccaaacagagctctcctcccagccctgacacatgtcct
gagaacagtcctttcctcagtagcccctccatggatatctccccatcaggattcccgaag
cgtcgcactgctcggaagcagctcccgaaacggacaattcaggacactgtggaggagcag
aatgaggacaaagacagagcagccaagaaaaggaagaaggaagaagaagcacagacccca
atggaaagcctcacagagactagagatgtaaaacagaaggaagaaaaggaggcgggccag
cccctagagcctgccaagtcccctgagacagtaacccagacaaagacagagaacattcca
gtgtgtaaggacggtgtgaaacgggagcctcaggaagaggagcagagcaagcctccttcc
agaggtgccaagacactcagcagcttcttcactccccggaagccagcagtgaaagccaaa
gagaaacgagaagagtcaggtaccccagggaaggaagagaccaagggaaccctggatcca
gcaaattacaatccttccaagagtaactaccatcccattgaagatgcctgctggaaacac
ggccagaaagtcccttttctcgctgtggcccggacatttgagaagatcgaggaggtttct
gctcggctcaagatggtggagacactgagtaacttgctgcgctccgtggtggccctgtca
cctccagacctgcttcctgttctctacctcagcctcaaccgcctcgggccacctcagcag
ggactagagctgggtgttggtgatggtgtcctccttaaggcagttgcccaggccacaggt
cgtcagctggagtctgtccgggctgaggtagctgagaagggtgacgtgggcctggtggcc
gagaacagccgcagcactcagagactcatgctgcccccacctccgctcaccacctccggc
gtcttcaccaaattctgtgacattgcccggctcactggcagtgcttccatgaccaagaag
ctggacatcatcaagggcctttttgtggcctgccgccactcggaagcccggttcattgcc
aggtccctaagtggacggctgcgccttgggctggctgagcagtcggtcttagctgcgctt
gcccaggctgtgagcctcacgccccctggccaagaatttcccccagctgttgtggatgcc
gggaagggcaagaccacagaggccagaaagatgtggttggaagaacaaggcatgatcttg
aagcagaccttctgtgaggtgcctgacctgtatcgaatcatcccggtactgctggaacat
ggcctggaaagtctcccagagcactgcaggctgagcccaggggtccctcttaaaccaatg
ctggcccatcccacccggggtgtcagcgaggtactgaaacgctttgaggaggtggacttc
acctgcgagtacaagtacgatgggcagcgggcacagattcatgttctggaaggtggagag
gtgaagatcttcagccggaaccaggaagacaacacaggaaagtaccctgacatcatcagc
cgcatccccaagattaaactcccctcagtcacatcttttatcctggacactgaggctgtg
gcctgggaccgggaaaagaagcagatccagccattccaagtgctcaccacacgcaagcgc
aaggaggttgatgcatcggagatacaggtgcaggtgtgtctgtatgccttcgatctcatc
tacctcaacggagagtccctgattcgccagcccctgtctcgtcgccggcagctgctccgg
gagaacttcgtggagacagagggtgagtttgtcttcgccacctccctggacaccaaggac
atcgagcagattgctgagttcttggagcagtcggtgaaggactcctgcgaggggctgatg
gtgaagaccctggatgttgatgccacctatgagatcgccaagaggtcacacaactggctc
aagctgaagaaggactaccttgacggtgtgggcgacactctggaccttgtggtgattggt
gcctacctgggccgggggaagcgtgccggccgctacgggggcttcctcttggctgcctat
gatgaggagagtgaagagctgcaggccatttgcaagttggggactggattcagcgatgaa
gagctggaggaacatcaccagagcctaaaggccctagtgttgccgaccccacggccctat
gtgaggattgatggggcagttgccccagaccactggttggaccccagcgtcgtatgggag
gtcaagtgtgcagatctgtccctgtcccccatctatcctgccgcacggggcctggtggac
aaagagaaggggatctcccttcgtttccctcggttcattcgtgtccgtgaagacaagcag
ccagagcaggccaccaccagtgaccaggtggcctgtttgtaccggaagcagagtcagata
cagaaccagcacaactcagacttggactccgaccttgaggactgctattaa
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integrated database retrieval system
