Mesocricetus auratus (golden hamster): 101836414
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Entry
101836414 CDS
T08306
Symbol
Col11a1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
maua
Mesocricetus auratus (golden hamster)
Pathway
maua04820
Cytoskeleton in muscle cells
maua04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
maua00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101836414 (Col11a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101836414 (Col11a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
maua00536
]
101836414 (Col11a1)
Glycosaminoglycan binding proteins [BR:
maua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101836414 (Col11a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
101836414
NCBI-ProteinID:
XP_040607936
LinkDB
All DBs
Position
Unknown
AA seq
1816 aa
AA seq
DB search
MEPWSRWKMKRCIWNLTISTIAWTFLFQAREVRGAAPVDILKALDFHNSPVGISKTTGFC
TNRKNSRDSDTAYRVTEEAQISAPTKQLFPGGIFPEDFSILFTIKPKKGTQAFLLSIYNE
HGIQQLGVEVGRSPVFLFEDHNGKPSPEDYPIFSTVNIADGKWHRVAISVEKKTVTMIVD
CKKKITKPLDRSERSIVDTNGIMVFGTRILETDVFQGDIQQFLITGDPKAAYDYCDHYSP
DCDSTSKAAQAQEPQIDEKMKSNYTKKKRTMTTNSKKKSKKFTSPKSEKYASKKKKRYQA
TAKAKLGAQANIVDDFQDYNYGTMETYQTESPRRLSGSNEPNPVEEGFTEEYLTGEDYDV
QRNISEDILYGNKGIDGRDSDLLVDGDLGEYDFYEYKEYEERTTTSPNEEFGPGVPAETD
FTETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGLMGPPGQQGPSGPPGDPGD
RGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDSSKGPTISAQEAQAQAILQQARIALRGP
PGPMGLTGRPGPVGGPGSAGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGM
PGEPGSKGDQGFDGLPGLPGDKGHRGERGPQGPPGLPGDDGMRGEDGEIGPRGLPGEAGP
RGLLGPRGTPGPPGQPGIAGIDGPQGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGP
PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGV
RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQ
AGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGS
RGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPAGKDGLPGHPGQ
RGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGD
PGPQGISGKSGPAGIRGFPGERGLPGAQGAPGLKGGEGPQGPQGPVGSPGERGSAGTAGP
IGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGLPGPAGPAGSPGEDGDKGE
IGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEAGPRGQQGMFGQKGDEGARGF
PGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGG
VGDKGEPGEAGNPGPPGEAGSSGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGP
VGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAPGS
EGRQGEKGAKGEAGAEGPPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGAAGQDGP
PGPLGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGI
PGPAGPIGPPGPPGLPGPAGPKGNKGSSGPTGQKGDSGLPGPPGPPGPPGEVIQPLPILS
PKKTRRHTESIQADAGDNILDYADGMEEIFGSLNSLKQDIEHMKFPMGTQSNPARTCKDL
QLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGARISSWPKEKPGS
WYSEFKRGKLLSYLDVEGNSINMVQMTFLRLLTASARQNFTYHCHQSIAWFDMSSASYDK
ALRFLGSNDEEMSYENNPHIKALYDGCASRKGYEKTVIEINTPKIDQVPIIDVMINDFGD
QNQKFGFEVGPVCFLG
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atggaaccctggtccaggtggaaaatgaaacggtgtatctggaatctcaccatctcaacc
atcgcctggactttcctcttccaagccagagaggtcagaggagctgctccagttgatata
ctaaaagcactagattttcacaattctccagtggggatatctaaaacaacaggattttgt
acaaacagaaagaattctagagattcagacactgcttacagagttacagaggaagcacaa
atcagtgccccaacaaaacagctatttccaggtggaatttttcctgaagatttttcaata
ctatttacaataaaacccaaaaaaggaactcaagctttccttttatcaatatataatgaa
cacggtattcagcagcttggtgttgaggttgggagatcacctgtctttctatttgaagac
cacaatggaaaacccagtcctgaagactatcccatattctcaacagttaacatcgctgat
ggaaagtggcatcgggtcgcaatcagtgtggagaagaaaactgtgacaatgattgttgat
tgtaagaagaaaatcacaaaacccctcgatagaagtgagagatcaatagtcgataccaac
ggaatcatggtgttcggaacaagaattttagaaacagatgtttttcagggcgatattcag
cagttcttgatcactggtgaccccaaggcagcatatgactactgtgaccattatagtcca
gactgtgactcaacatccaaggctgctcaagctcaggagccacagatagatgagaagatg
aaatccaattacacaaagaagaagaggacaatgaccactaactcaaagaaaaagtctaaa
aagttcacatcccccaaatctgaaaaatatgcatccaagaagaagaaacgttaccaagct
acagccaaagccaaactaggggctcaggcaaatattgtggatgattttcaagactacaac
tatggaacaatggaaacttaccagacagagtctcctaggcgcttatcaggatcaaatgag
ccaaatccagttgaagaaggttttactgaagaatatctaactggagaggattatgatgtc
cagagaaacatttctgaggatattctatatggaaacaaaggaatagacggcagggactct
gatctgctggtagatggagatttaggcgaatatgatttttatgaatacaaggaatatgaa
gaaaggacaacaacttcccctaatgaagaatttggccctggtgttccagcagaaactgat
ttcacagaaacaagcataaacggccatggcgcatatggagagaaagggcagaagggggaa
ccagctgtagttgaacctgggatgcttgttgaaggaccacctgggccagcaggaccagcg
ggtctaatgggtcctccaggtcaacaaggcccttctgggccccccggtgaccctggtgat
aggggacccccaggacgtcctggcttaccaggggctgatggtctacctggtcctcctgga
accatgttgatgctacccttccgctatgggggtgacagttccaaaggaccaaccatctct
gcgcaggaagctcaagctcaggcaattcttcagcaggctcggattgctctgagaggccca
cctggcccaatgggtctaactggaagaccaggtcctgtggggggtcctggttcagctgga
gctaaaggtgagagtggggatccaggtccccagggccctcgaggtgttcaaggtccacct
ggccctacaggaaaacctggaaagaggggccgtccaggtgcagatggaggaagagggatg
ccaggagaacctgggtctaagggagaccaaggatttgatggacttccaggtctgccaggt
gacaaaggtcataggggagaaagaggcccacaaggtccccccggccttcctggtgatgat
ggaatgaggggagaagatggggagatcgggcccaggggtcttccaggtgaagctggtcca
cgaggcttgctgggaccacggggaactccaggacctcccgggcagcctggtattgcaggt
atagatggcccacaaggacctaaaggaaacatgggtcctcaaggagagcctggacctcct
ggtcagcaagggaatccaggacctcagggtcttcctggtccacaaggccctattggccca
cctggtgaaaaaggaccacaaggaaagccagggcttgctggtctaccaggtgcagatggg
cctccgggacaccctggaaaagaaggccagtctggagaaaagggggccctgggtcctcct
ggtccacaaggtcctattggctatcctggtccccgtggagtaaagggcgctgatggtgtc
agaggtcttaagggatctaaaggtgaaaagggtgaagatggctttccagggttcaaaggt
gacatggggcttaaaggtgacagaggagaggtgggtcaagttggcccaagaggggaagat
ggccctgagggccccaaaggccgtgcaggtccaactggagacccaggaccctctggtcaa
gcaggagagaaggggaaacttggggttccaggattgccgggatatccaggaagacaaggt
cctaagggctccactggatttcctggatttccaggtgccaacggggagaaaggtgcccgg
ggagttgctggcaaaccgggcccccggggtcaacgtggtccaacgggtcctcgaggttcc
agaggtgccagaggtcctacagggaagcctgggccaaagggtacttcaggtggtgatggt
cctcctggccctccaggtgaaagaggccctcaaggacctcagggtccagttggattccct
ggaccaaaaggcccccctggccctgctgggaaggatggactaccaggacaccctgggcag
cgtggagagaccggatttcaaggcaagaccggtccccctgggccaggaggtgtcgttgga
cctcagggaccgactggagagactggtccaataggtgaacgtgggcatcctggacctcct
ggtcctcctggtgagcaaggactacctggtgctgcaggaaaagaaggtgcaaagggtgac
ccaggccctcaaggtatctcagggaaaagtggaccagcaggaatacgtggtttcccaggt
gaaagaggtcttcctggagcccagggtgcacctggactgaaaggaggagaaggtccccaa
ggcccacagggtccagttggctctccgggagaacgcggctctgcaggcacagcagggcca
attggtttgcctggccgtccaggtccccagggccctcctggaccagctggagaaaaaggt
gctcctggagagaagggtcctcaaggccctgcaggtagagatggaatccaaggccctgtg
ggtcttcctgggcctgcgggtcctgctggctctcctggtgaggatggagacaagggtgaa
attggagaaccaggtcaaaaaggcagcaaaggtgacaaaggtgaaaatggccctcctggt
ccgccagggcttcaaggacctgttggtgcccctggaattgctggaggagatggtgaggca
ggtcccagaggacagcaggggatgtttggacaaaagggtgatgaaggtgcacgaggtttc
ccaggaccacctggacccataggtcttcaggggttgccaggcccgccaggcgaaaagggt
gaaaatggagatgttggacccatgggtccaccaggtcctcctggcccacgaggtcctcaa
ggtcccaatggagctgatggaccacaaggacccccaggctctattggttctgttggtggt
gtgggagataagggtgaacctggagaagcagggaaccccggaccccctggtgaagctggc
tcaagtggtcccaaaggagagagaggagagaaaggggaagctgggcctcctggtgctgct
ggtcctgctggtgctaaggggccaccaggggatgatggccccaaagggaacccggggcct
gttggttttcctggagatcctggtccacctggggagcctggccctgcagggcaagatggt
gttggaggtgacaagggtgaagatggagatccagggcaaccgggtccccctggtccatct
ggtgaggctggtccaccaggtcctcctggaaagaggggtcctcctggggctccaggttca
gaaggaaggcaaggcgaaaaaggtgctaagggagaagctggtgctgaaggacctcctggg
aaaactggccctgttggacctcagggtccttctggaaagcctggtccagaaggtcttcga
ggaatccctggtcctgtgggagaacaaggactccctggtgctgctggccaagatggaccc
cctggtcctctgggacctcctggtttacctggtctcaaaggtgaccctggctccaagggt
gaaaagggacatcctggtttaattggattgattggccctccaggagaacaaggggagaaa
ggtgacagaggactccctgggactcaaggttctccaggagccaaaggggatgggggcatc
ccaggtcctgctggtcccataggccctccgggtcctccaggattaccaggtcctgctggc
ccgaagggtaacaaaggatcttctggacctactggtcagaagggtgacagtggtctgcca
gggcctcctgggcctccaggtcctcctggagaagtcatccagccattaccgattttgtca
cccaaaaagacaagaagacatactgaaagcattcaggccgatgcaggggataatattctt
gattatgcagatggaatggaggaaatatttggttccctcaattctctgaaacaagacatt
gaacatatgaagtttccaatgggtacgcagagcaatccagcacgaacatgcaaagacctg
cagcttagccatcctgacttcccagatggtgaatattggattgatcctaaccaaggttgt
tctggagattccttcaaagtgtactgtaatttcacagctggcggggagacatgcatctat
ccagacaaaaaatctgagggagcaagaatttcatcatggccaaaggagaaaccaggaagc
tggtacagtgaatttaagagaggaaaactgctttcatatttagacgtggaaggcaattcc
attaatatggtgcaaatgacattcctgagactcttgactgcttctgcccgacaaaatttc
acctaccactgccatcagtcaattgcatggtttgacatgtcatcggcaagttatgacaaa
gcacttcggtttctgggatctaatgatgaggaaatgtcctatgagaacaacccacacatc
aaggcattgtatgacggctgtgcgtccagaaaaggctatgaaaagactgtgattgaaatc
aatactccgaaaattgatcaggtacccatcattgatgtaatgatcaatgattttggtgat
cagaatcagaagtttggatttgaagtcggtccagtttgctttcttggctga
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integrated database retrieval system
