Mesocricetus auratus (golden hamster): 101837188
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Entry
101837188 CDS
T08306
Symbol
Scn11a
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
maua
Mesocricetus auratus (golden hamster)
Brite
KEGG Orthology (KO) [BR:
maua00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
maua04040
]
101837188 (Scn11a)
Ion channels [BR:
maua04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
101837188 (Scn11a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
IQ_SCN5A_C
GPHH
Motif
Other DBs
NCBI-GeneID:
101837188
NCBI-ProteinID:
XP_040596069
UniProt:
A0ABM2WZK4
LinkDB
All DBs
Position
Unknown
AA seq
1782 aa
AA seq
DB search
MEDRYYPVIFPDERNFRPFTSDSLAAIEKRIAIQKEKKSSKDKAAAEPQPRPQLDLKASR
KLPKLYGDIPQDLIAKPLEDLDPFYRDHKTFMVLNKKRTIYRFSAKRALFILGPFNPVRS
LVIQISVHSLFSMFIIGTVVINCMFMAKFGDRSSDTEISEYIFTGIYILEAVIKILARGF
ILDEFSFLRDPWNWLDFIVIGTAVATCFPGTKVNLSALRSFRVFRALKAISVVSGLKVIV
GALLRSVKKLVDVMVLTLFCLSIFALVGQQLFMGILNQKCIKANCGPNSTSNKDCFVKEK
NSDDFVMCGTWLGSRPCPDNSTCSRTSFNPDYNYTNFDNFGWSFLAMFRVMTQDSWEKLY
RQILRTSGIYFVFFFVVVIFLGSFYLLNLTLAVVTMAYEEQNRNVAAETEAKEKMFQEAQ
QLLREEKEALVAMGIDRSSLNSLQASSFSPKKRKFFGSTTRKSFFMRKSKKDRASASDSE
DDSSKNPQLLEQTKRLSQNLPVDLFDEHIDPFHRQRALSAVSILTITMQEQEKSQEPCLP
CGKNLAAKYLVWDCSPWWLSLKKALGTVMTDPFTELAITICIIINTVFLAMEHHNMDEAF
INLLKIGNWVFTGIFIAEMCLKIIALDPYHYFRHGWNVFDSIVALLSLADVLYNNLSDKS
SRSNRSFLASFRVLRVFKLAKSWPTLNTLIKIIGHSVGALGNLTVVLTIVVFIFSVVGMQ
LFGNKFNKTSQGQHRRRWHMGDFYHSFLVVFRILCGEWIENMWECMQEMDGSPLCVIVFV
LIMVVGKLVVLNLFIALLLNSFSNEERDGSPKGETRKTKVQLALDRFRRAFSFVVHALQG
FCCKQRRRQNSPKPKEITGSFVSENKDIIPLDTKPSRELDALRTWDTEHDGARLAPLAEE
EDDTECYGELRVPSVSQAGARVQGDEMIQKDLRPLRVHQTCDVPLETAQPTSPDDKGVET
EVFSEEDPHLPKQSARKNSDAASALSECSTVDLNDIFRNFRNLDPPKKQPDRCLPKGLCC
HFLCHKTDKRKPPWVVWWNLRKTCYQIVRHSWFESFIIFVILLSSGALIFEDVNISKRPQ
IDRLLKCTDNIFTFIFILEMVLKWVAFGFRRYFTSAWCWLDFLIVIVSVVSLMNLPTLKS
FRTLRALRPLRALSQFEGMKVVVNALISAIPAILNVLLVCLIFWLIFCILGVNFFSGKFG
RCINGTDINKYFNHTEIGNRSQCEGSNYLWEVPKVNFDNVGNAYLALLQVATYKGWLDIM
NAAVDSRGKDEQPDFEANAFAYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKLGGQDI
FMTEEQKKYYNAMKKLGTKKPQKPIPRPLNKCQAFVFDLVTSQVFDVIILGLIVLNMIIM
MAESDGQSNDVKKIFDILNIAFVIIFTIECLVKMFALRQYYFTNGWNLFDCVVVVLSVIS
TLVSGLEHSDIPFPPTLFRIVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFNIGLLL
FLVMFIYAIFGMNCFSKVERGSGIDDIFNFETFSGSMLCLFQVTTSAGWDALLSPMLDSR
AATNSSSQDSCQQPRIAIIYFVSYIVISFLIVVNMYIAVILENFNTATEESEDPLGEDDF
EIFYEIWEKFDPEATQFIQYSALSDFADALPEPLRVAKPNRFQFLVMDLPMVTGDRLHCL
DVLFAFTTRVLGNSSGLDTMKAMMEEKFMEANPFRKLYEPIVTTTKRKEEELCAAVIQRA
YRKHMEKMIKLKLQGRSSSSHQTVCNGDLSSLEVAKVKVHYD
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaggtactacccagtgatcttcccagacgagcggaatttccgtcccttcact
tccgactctctggctgcaatagagaagaggatcgccatccagaaggagaagaagtcctcc
aaggacaaggcagcagctgagccccagcctcggcctcagcttgacctaaaggcctccagg
aagttgccaaagctttatggtgacattccccaggatctgatagcgaagcccctggaggat
ctggacccattctacagagaccataagacattcatggtgctgaacaagaagaggacaata
tatcgcttcagtgccaagcgggccttgttcattttggggcctttcaatcccgtcagaagc
ttagtgattcaaatctctgtccattcgctcttcagcatgttcatcatcggcacggtggtc
atcaactgtatgttcatggctaaatttggggacaggagttcagacacggaaatttccgaa
tacatcttcactgggatttatatcttagaagccgtgattaaaatactggcaagaggcttc
atcctggatgagttttccttcctccgagacccgtggaactggctggacttcattgtcatt
ggaacggcggtcgcgacttgttttccaggcaccaaagtcaatctctcggccctccgttcc
ttccgagtgttcagagctctgaaagcgatttccgttgtctcaggtctgaaggtcattgtc
ggggctctgctgcgctcggtgaagaagctggtggacgtgatggtcctcactctcttttgc
cttagcatctttgccctggttggtcagcagctcttcatgggaattctgaaccagaaatgt
attaaagccaactgtggccctaactctacgtccaacaaggattgctttgtaaaggagaaa
aatagtgacgacttcgtcatgtgtggcacctggctcggcagcagaccctgtcccgacaat
tctacatgcagtagaacctcgttcaacccagactataactatacgaactttgacaacttt
ggctggtctttccttgccatgttccgggttatgactcaggactcctgggagaagctttac
cgacagatcctccggacctctggaatctactttgtcttcttcttcgtggtggtcatcttc
ctgggctctttctacctgctcaacctaaccctggccgtcgtcaccatggcgtatgaagag
cagaacaggaacgtagccgcagagaccgaggccaaggaaaagatgtttcaggaagcccag
cagctcttaagggaggagaaagaggctctggttgcgatgggaatcgacagaagttcgctt
aattcccttcaagcatcgtccttttctccaaagaagaggaagtttttcggtagtacgaca
agaaagtccttctttatgagaaagtctaagaaggaccgggcctcagcctcagattcagaa
gacgattcctctaaaaaccctcaactgcttgagcaaaccaaacggctgtcccagaacttg
cctgtggacctctttgatgagcacatagatcccttccacaggcagagggctctgagcgcc
gtcagcatcctgaccatcaccatgcaggaacaagaaaaatcccaggagccttgtctccca
tgtgggaaaaacttggcagccaagtacctggtgtgggactgcagtccctggtggctgagt
ctaaagaaggccctggggaccgtgatgacagacccctttacagagctggccatcaccatc
tgcatcataatcaacaccgtcttcctggccatggagcaccacaacatggacgaggctttc
ataaatctgctgaaaataggaaactgggttttcactgggatcttcatagccgaaatgtgt
ctaaagatcatcgcgctggacccttaccactacttccgccacggctggaacgtctttgac
agcattgtggccctcctgagtcttgctgacgtgctttacaacaacctgtcggacaagagc
agccgctcaaatcgctccttcttggcttccttcagagtgctgagggtcttcaagttagcc
aaatcttggcccactttaaacaccctcattaagatcatcggccactccgtgggtgcgctt
ggaaacctgactgtggtcctgaccattgtggtcttcattttctccgtcgtgggcatgcag
ctctttggcaataagttcaacaagacctcacaggggcagcacaggcggcgctggcacatg
ggcgacttctaccactccttcctggtggtgttccgcatcctctgcggggagtggatcgag
aacatgtgggagtgcatgcaggagatggacggttctccactatgcgtcatcgtctttgtg
ctgatcatggtggtgggaaagcttgtggtgcttaacctcttcattgccttgctgctcaat
tccttcagcaatgaggagagggatgggagccccaaaggagagaccaggaaaaccaaagtg
cagctagctctggatcggttccgccgggccttttccttcgtggtgcatgctcttcagggt
ttttgctgcaagcaacgcaggaggcaaaactcaccaaagccgaaagagatcacaggaagt
tttgttagtgagaataaagacatcatcccgctggatacaaagccctccagggagcttgat
gcactaaggacttgggacaccgagcacgacggagctcgcttggccccacttgcggaggaa
gaggatgacaccgaatgctatggtgaactcagagtcccatccgtctctcaagctggtgcc
agagttcagggtgacgagatgattcagaaagacctcaggcctctacgtgtgcatcagacc
tgtgacgtccctctggagactgcgcagcccaccagcccagatgacaaaggtgtggaaacc
gaggtgttctcagaagaagaccctcatttacccaaacagagtgctcgaaagaactctgat
gctgcgagtgcactctcagaatgcagcaccgttgacctgaatgatatcttcagaaatttc
cggaatttggatccccccaaaaagcaaccagatagatgcttgcccaaaggcctctgctgt
cacttcctatgccacaaaacagacaagagaaagcccccctgggttgtgtggtggaatctt
cggaaaacctgctaccaaatcgtgaggcacagctggtttgagagcttcatcatcttcgtc
atcctgctgagcagcggagccctgatatttgaagatgtcaacatctccaaacggccccaa
attgaccggttgctaaagtgtactgacaatatcttcacatttatcttcatcctggagatg
gttctaaaatgggtggcctttggattccggaggtatttcaccagcgcctggtgctggctc
gatttcctcattgtaatcgtgtctgtggtcagtctcatgaacttgccaaccttgaagtcc
ttccggactctgcgagcactgaggcctctgcgggcgctgtctcagtttgaaggaatgaag
gttgtggtcaacgccctcatcagtgccatacccgccattctcaatgtcttgctggtctgc
ctcattttctggctgatattttgcatcctgggagtaaatttcttttctgggaagtttgga
agatgcattaacgggacagatataaataaatacttcaatcataccgagattggaaaccga
agccagtgtgaaggtagcaattacttgtgggaggtcccgaaagtcaactttgacaacgtg
gggaatgcctacctcgctctgctgcaggtggcgacgtacaagggctggctggacataatg
aatgccgctgtcgattccagagggaaagatgagcagccagactttgaggcgaatgccttt
gcgtatctctacttcgtggtttttatcatcttcggctcgttcttcaccctgaacctcttt
atcggcgttattattgacaacttcaaccagcagcagaaaaagttaggtggccaagacatt
tttatgaccgaggaacagaagaaatactataatgcaatgaaaaaattaggaaccaaaaaa
cctcagaaacccatcccaaggccactgaataaatgtcaagcctttgttttcgacctggtc
acaagccaggtctttgacgtcatcattctgggtcttattgtcctaaatatgattatcatg
atggctgaatctgatggccagagcaatgatgtgaagaaaatctttgatattctcaacata
gcctttgtgatcatctttaccatagaatgtctcgtcaaaatgtttgctttgaggcaatac
tacttcaccaatggctggaatttatttgattgtgtggtcgtggttctttctgtcattagt
accctggtgtctggcttggagcacagtgacatccctttcccgcccacgctcttccgaatc
gtccgcttggcacgcatcggccgcatcctccgactggtccgggcggcgcgaggcatcagg
acgctgctcttcgctctgatgatgtcgctcccctccctcttcaacatcggcctcctgctc
ttcctcgtcatgttcatctacgccatcttcggcatgaactgcttctccaaggtggagagg
ggctctgggatcgacgacatcttcaacttcgaaacattctcaggcagcatgctctgcctc
ttccaggtgaccacgtccgctggctgggacgccctcctcagccccatgctggactcaaga
gccgccaccaactcctcctcccaagacagctgccagcagccgcggatagccatcatctac
tttgtcagttacatcgtcatctccttcctcattgtggtcaacatgtacatcgccgtcatc
ctggagaacttcaacaccgccacggaggagagcgaggaccctctgggcgaagacgacttt
gaaatcttctacgagatctgggagaagtttgaccccgaagcaacgcagttcatccagtac
tcggccctctccgacttcgccgacgccctgcctgagccgctgcgcgtggccaagcctaac
aggtttcagtttctagtgatggacttgcccatggtgaccggcgatcgcctccactgcctg
gacgttctcttcgccttcaccaccagggtcctcgggaactccagtggcttggataccatg
aaagcgatgatggaggaaaagttcatggaggccaaccctttcaggaagctgtacgagccc
atcgtcaccaccaccaagagaaaggaggaggaactgtgcgctgcggtcatccagagggcc
taccgaaaacacatggagaagatgatcaagttgaagctccaaggcaggtccagttcatca
caccagacagtttgcaacggagacctgtctagcttggaggtggccaaggtcaaggttcac
tatgactga
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integrated database retrieval system
