Mesocricetus auratus (golden hamster): 101837269
Help
Entry
101837269 CDS
T08306
Symbol
Col16a1
Name
(RefSeq) collagen alpha-1(XVI) chain isoform X1
KO
K24339
collagen type XVI alpha
Organism
maua
Mesocricetus auratus (golden hamster)
Pathway
maua04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
maua00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101837269 (Col16a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
101837269
NCBI-ProteinID:
XP_012975703
EnsemblRapid:
ENSMAUG00000019908
UniProt:
A0A1U8CJ52
LinkDB
All DBs
Position
Unknown
AA seq
1625 aa
AA seq
DB search
MLASWAPGLWLLGLWATFSHGTNIGERCPASQQEGLKLEHSSDLSTNVTGFNLIRRLNLM
KTSAIKKIRNPKGPLILRLGAAPLTQPTRRVFPRGLPEEFALVLTVLLKKHTFRNTWYLF
QVTDANGYPQISLEVNSQERSLELRAQGQDGDFVSCIFPVPQLFDLRWHKLVLSVAGRVA
SVRVDCVSASSQPLGPRQPIRPGGHVFLGLDAEQGKPVSFDLQQAHIYCDPELALGEGCC
EILPGGCPPETSKARRDTQSNELIEINPQTEGKVYTRCFCLEEPQNSKEDAQLMGRSNQK
AERGTKAHRDTEVNECPPCVPGAQESNVTLGPSGPKGGKGERGLTGPSGPKGEKGARGSD
CVRVSSDAPLQCAEGPKGEKGESGDSGPSGLPGSTGQKGQKGEKGDGGLKGLPGKPGRDG
RPGEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGLPGIGLPGTPGDPGGPPGPKGDKG
SSGTPGKEGPGGKPGKPGVPGTKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPA
PAREGLGTVGRKGDRGDPGIQGMKGEKGEPCSSCSSGVGAQHLGPSTGVNEDLGSPGHGL
PGLPGKSGVPGPRGLKGEKGSFGDAGPAGVPGPPGPEGPAGTKGAKGEPCEPCAALSKLS
DGDSHVVRLPGPAGEKGEPGPPGFGLPGKQGRAGDRGLKGQKGDAGNPGDPGMPGIAGHP
GISGEPGVRGPAGPKGEKGDGCTACSSLQGALTDAAGLPGKPGPKGEPGPEGVGRPGKPG
QPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGAQGLPGIQGLAGPRGPPGSIGEKGA
QGPPGPKGATGPMGPPGASVSGPPGQDGQKGQAGLPGAKGTPGEKGSRGEKGEPGECSCA
SRGEPVFSGMPGAPGLWMGSSSQPGPQGPPGVPGPPGPPGMPGLQGVPGHNGLPGQPGLT
AELGSLPIEQHLLKSICGDCAQGQTAHPAFLLEKGEKGDQGIPGVPGFDNCARCFIGRER
PRAEEARGDNGEGEPGCPGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGTV
GSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYTGPAGEKGES
GPPGSEGLPGPQGPAGPRGERGPQGSSGEKGDPGFQGQPGFPGLPGPPGFPGKAGAPGPP
GPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLM
GPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGTEGEPGAMGPQGRPGPPGHLGPQGPP
GQPGPPGISTMGLKGDRGAPGERGLAGLPGQPGTPGHPGPPGEPGSDGAAGKEGPPGKQG
LYGPPGPKGDPGPAGQKGQAGEKGRSGMPGGPGKSGSMGPVGPPGPAGERGHPGSPGPAG
NPGLPGLPGSMGDMVNYDDIKRFIRQEIIKMFDERMAYYTSRMQFPMEVAAAPGRPGPPG
KDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGDIGVGIAGENGLPGPPGP
QGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPMKNM
KGPFG
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atgttggcatcctgggcccctggcttgtggctgctcgggctctgggccaccttcagccat
ggaacaaatataggtgagcggtgcccagcttcgcagcaagaaggactcaagctagagcac
agtagtgatctatcaaccaatgtgactggcttcaacctaatccgccgactgaacctcatg
aagacatctgccatcaagaagatccgcaaccccaaggggccactcatcttgcggctgggg
gctgccccgctgacccaacccactcgaagagtgttccctcggggtctcccagaggagttt
gccctggtcctgacagtcctgctgaagaagcacaccttccggaacacatggtacttgttc
caagtgactgatgcaaatgggtacccacagatctccttggaagtcaacagccaggagcgg
agtctagagctccgggcacagggccaggatggtgactttgtgtcctgcatcttcccagtg
ccccagctcttcgatttgcgttggcacaagctggtgctgagtgtggcaggtcgtgtggcc
tctgtgcgtgtggactgcgtctcagcctcctcccagcccctggggccacggcaacccatt
cggcctgggggacatgtatttctgggcttggatgctgagcagggcaagcccgtttcgttt
gaccttcagcaggcgcacatctactgtgacccggagctggcgctgggggagggctgctgt
gagatcttaccgggagggtgtcccccagagacctccaaggcccgccgggatacccagagc
aatgagctcattgaaatcaatcctcagacagagggcaaggtctacacccgctgcttctgc
ttggaggagccccagaacagcaaggaggatgcacagctgatgggaagaagcaaccagaag
gcagaaagggggacaaaggcccaccgggatactgaagtcaatgagtgcccgccctgtgtc
cctggtgcccaggagagcaacgtcacacttggtccctctggccccaagggaggaaaaggt
gagagaggcctgactggaccatcaggccccaagggagagaagggagcacggggcagtgac
tgtgttcgagtctcctcagatgccccacttcagtgtgcagaaggcccgaaaggagagaag
ggggagtcaggggactcgggaccctcaggactcccaggctcaacaggccagaagggccag
aaaggcgagaagggtgatggaggcctcaaaggattgccaggaaagccaggccgagatggt
cgaccaggagagatctgtgtcattgggcccaaagggcagaaaggtgaccctggctttgtt
gggcctgagggactggcaggagagcctgggccccctggcctcccggggctgcctgggata
ggactgcctggaactcctggagatccaggtggtccaccaggccctaagggagacaagggc
agctctgggactccaggaaaggaaggccccggagggaagcccgggaagccgggagtgcca
gggactaagggagagaagggtgacccctgtgaagtgtgtccaacgctgcctgaagggttc
cagaatttcgtgggactccctggaaaaccaggtcctaaaggggaaccaggtgatcctgct
ccagccagggagggcctaggaactgttggacggaaaggtgaccggggagatccaggcatc
caaggcatgaaaggagagaagggggagccctgctcatcctgcagttcaggtgttggggcc
cagcatcttgggccctctacaggagtcaatgaagacctgggctcccctggccatggttta
cctggccttccggggaaatctggagttcctgggccaagggggctgaaaggagagaagggt
agttttggtgatgcaggacctgcgggagttccagggccaccgggaccagagggaccagca
ggcaccaaaggggcaaagggagagccttgtgagccctgtgcagccttgtccaagctttcg
gatggggacagtcatgtggttcgcttgcctggcccggctggagagaagggagagcctggc
cccccaggctttgggctgcctgggaagcagggcagagctggagatcgaggactcaagggt
caaaagggtgatgctgggaatcccggagaccctggaatgccgggcatcgctgggcatcct
ggcatatctggagagcctggggttcggggtcctgctgggccgaaaggagaaaagggtgat
ggctgcactgcctgctctagcctgcagggggcgttaaccgatgcagcgggactgcctgga
aagccaggtcccaaaggagagccaggtcctgaaggcgtgggtcggcccgggaaaccaggc
cagcctggtctaccaggagttcaagggcccccgggactgaagggcactcagggagagcct
ggacctccaggcactggtgctgagggaccccagggcgagcctggagcccagggtttgcct
ggcattcagggacttgcgggacctcggggaccacctggctcaattggtgagaaaggtgcc
cagggacctccagggcccaaaggagccacaggacccatgggacctcctggtgctagtgtc
tccgggcctccgggtcaagatgggcagaaaggacaggctggacttccaggagccaaaggg
acaccaggtgaaaagggatctcgaggagagaagggtgaaccaggagagtgctcctgtgct
tcccggggagagccagttttctcgggcatgccgggtgctccgggactgtggatgggcagc
tcctcgcagccgggcccgcagggccccccaggtgtcccaggacctccaggtccccctgga
atgcctggactgcagggagtgccgggtcacaacggtttgccaggacagcctgggctcact
gcggagctgggatccttacccattgagcagcatctcctcaagagcatctgtggagactgt
gcccagggacagacggcccatccagccttccttctggagaagggagaaaagggagaccag
ggcatccctggcgtgccaggctttgacaactgtgccaggtgcttcataggaagggagcgc
ccaagagcggaggaggccaggggagacaacggtgagggagaacctggctgtcctgggagc
cctggcttgcctggtcctccagggctgccaggccaaagaggagaagagggtccacccggc
atgaggggctctccaggtcctccaggtcctattggccccccaggttttcctggtactgtt
ggctcccccggattgcctggcctgcaaggggagcgaggtctcacaggcctgactggagac
aagggagagccgggtcctccaggacaacctggctacccaggtgctatgggacccccggga
ctgcctggcatcaagggagagcgaggatacactggccccgcaggagagaagggcgagtcg
ggcccaccaggatctgaaggccttccaggtccccaaggcccagcgggtcctcgaggagag
cgaggcccccaggggagctctggtgagaagggtgacccgggatttcaaggccagccgggc
ttcccaggcctaccgggtcccccaggattcccaggcaaagctggagcccctggccctcct
ggtccccaagcagagaagggcagtgaagggatccgaggtccatcaggcttgcctggttcc
cctgggccaccaggccctcctgggattcagggccctgctgggctggatggactagacggg
aaggatggcaagcccggcctgaggggggacccaggtcctgctggccctcctggactcatg
ggacccccgggtttcaaggggaaaacaggacatcctggcctccctgggcctaagggtgac
tgcggaaagccaggtccccccggaagcagtggccggccaggtacagagggggaacctggt
gccatgggaccccagggacgaccaggacccccaggtcatcttgggccacaggggcctcca
ggccagccaggcccacctgggatctccactatgggcctgaaaggagaccggggagcccct
ggagaaaggggcttggcaggcctccccggccagcctggcacccccggacaccctggccct
ccgggtgagcctggttcggacggtgcagctggcaaagagggacctcctggaaagcagggg
ctctatggacctccgggcccaaagggtgacccaggacctgcaggacagaagggccaagca
ggagagaagggaagatctggcatgccaggggggcctggcaagagcggttccatgggacct
gttgggccaccaggtcctgcaggagagagaggccaccctggttccccagggcctgcaggg
aaccctggactgcctggtttaccaggctctatgggagacatggtgaattatgatgacatc
aagaggttcatcagacaagagatcattaaaatgtttgatgagaggatggcttactacacc
tccaggatgcagttccccatggaggtggcagcagctccaggccggccagggccccctggg
aaagatggtgctccaggccggccaggtgctccaggatcacctgggctccctggtcagata
ggcagagaaggacgccagggtttgccaggaatgagaggattacctggcaccaaaggtgaa
aagggagacatcggtgttggcattgcaggagaaaacggtctacccggccccccaggtcct
caaggacctccaggttatggcaagatgggcgcaacagggccaatgggccagcaaggcatc
ccgggaatccctggccccccgggtccaatgggccagccagggaaggctggtcactgcaac
ccctcagactgctttggggccatgccaatggagcaacagtatccacccatgaaaaacatg
aaggggccctttggctga
DBGET
integrated database retrieval system
