Mesocricetus auratus (golden hamster): 101838649
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Entry
101838649 CDS
T08306
Symbol
Spg11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
maua
Mesocricetus auratus (golden hamster)
Pathway
maua05014
Amyotrophic lateral sclerosis
maua05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
maua00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
101838649 (Spg11)
05022 Pathways of neurodegeneration - multiple diseases
101838649 (Spg11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maua03400
]
101838649 (Spg11)
DNA repair and recombination proteins [BR:
maua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
101838649 (Spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
101838649
NCBI-ProteinID:
XP_040602103
LinkDB
All DBs
Position
Unknown
AA seq
2430 aa
AA seq
DB search
MAAKLGPGSVASPGCAGAMERVLPMLLVQIPAKETAQLGSRAQLHREQEALGSLTAAGSL
QVLSLAPGSRGGSSCCLPGPFGHFAWEDSHDSSISTGKPKLLAVSEDYELLTYEFDLKDG
GCTATLLHSCCGKTLQKLIEDQGVSISFKSLRILSFHKTALLLINSCLIVRIDFAGRESG
SVLDCFSLPLPAQTADTVIDVQLCRGLLFVLSTLGWIYIFDTADGMHVAHVDLAFLQGDS
EQQEAASVSSFTSLKVSPDLDVLVIVSSSSTAVALNLNLYFRQHPGDLLCERTLEDLPIE
GPTGLDEDDLASSVHSMKLTKVAFQVDRSWRAQLSSLNETTRSQKPEASCCAPWFQGVLR
VESPGSGNHTPIVPNHVFIPGDVTYGQCAFPQKEHIKTSDPRRPWETMHLSEQEQPAELT
CLSVTGFTALFTWAVGKTSCTIVLWDLETQSMQCFSLSQKCTPVESSGDQQLCLVLTESG
LSLILFGLTQEEFLNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENRQLDTVDFF
LKSKENLLTPSSKPPVPDQLHHFSSQLYLRQVEEMTPALDLLCSAIRESDSETQSKHFAE
QLLHLTLSFLNKQIKELFVHTEEIDEHLQKGVDILTSYISELRTFMIKFPWKPADATDEY
EVNKDVLTVKEGKIWEKLNFEEVIADAILSNKIAEAQTFFRITNHSAQRLEELVRVGLDL
VFDSLKKSNAEEASVLLRNMGFNVEDELLKICFYTTDKNIRDFLVEVLKEKECFSEKERR
TVDFVLQVEKFYSGRFPENVQMQSSPSYWIKEQDYFKHKSILDTFLKCDQKDEFNEQHHK
IALNWAHWWDQQTQECILLPRISPEEYKAHSPDALWRYLTARHDWSTISLWIEEFQTQET
GPPQQNKWPPLSTGIIDQNTCCNNYMRNKILDKLARSGVFLASELEDFELFLLRLSRIGG
VMQDTLPMQSYKSSGGWDFHSRFILYCLEHGLQHLLYVYLDYYKLSPGNCPFLEKKELHE
AHPWLEFLVQCRQVSSNLTDPKLIFQASLANAQILIPTNQASVSSMLLEGHTLLALATTM
YAPGGVSQVIQSEGSESCLKKVDPQLLKMALTPYPKLKAALFPQCTAPSILPSDITLYHL
LQSLPPFDPSRLFGWQSANTLAIGDTANHLPHFSSPDLVSKYAVVERLNYAYYLHHGRPS
FAFGTFLVQELIKSKTPKQLIQQVGKEAYTLGLASFHSPSVGAACVCFLELLGLSSLKLR
VDMKMANVILGYKCRNEDGHPSFIRESLAEKLSKLADGDKATTEELLVLLEEGVWNNITQ
QGLNRLCSESSSQWTLVLQFCTVHNIKLSMSYLRECAKANDWLQFLVHSQLHNYHLEEVK
SLLQNFSPVLQSHLKLAFEKLSSGPISRVDGGQDHKYLQELQRNKEEMRDFFEILHQCSE
ESASWCWLLTEAVKQRAPILSVLASCFQEASAVPCLCVWIVTSVGDRVAAEAMEHIQASV
EDHPWSLDDLSIIWRTVLTRQKSHTLIRGFRLFIKDSPLLLIMEMYELCMFFKNYEKAKV
KLVEFQKSLETLDTAATRVLPIIPATWMKDQVCFLLKLMLQQCQTQYELGKTLQLLVGTE
HLFSDGPDVHKLCVLSQILKDTPIAINPEVITSYSAENFQHECRSILEKLKADGQFAVAT
RVAELAALPADSLVIDQLTQEMKTLKHTQQWPLKHARIDFWKKCHETFKKNSISNRAASS
FFSSQVPVVSEHPAEQDRLEERHLLLLLVGHWLAQEEPVPLEELEELEKQAWICRITQHT
RPEEAQTSPSQQKSAGVELSFGSLADEFSFSKLAALNTSKYLDLNGLPSKDKCESTLDWK
EQESLSVLIGHLLDGGCVQEASRACRYFHFYSQDVALVLHCRALASAEASMEDLHSEIRA
LLPSAGLPEDQESPSVPLPKVHSASGLDSQSFMMVPPTDEVARNLQALTSKCLHGKNYCR
QVLCLYELAKELGCSYADVASRDSEAVLRTILASQRPDRCRQAQVFISTQGLEPDMVAEL
VAEEVTRELLTPSGGTGEKQPFNPAESQTFLQLTALCQDRTLVGMKLLDKIPSVPHGELS
CTTELLILAHHCLTLTCHMEGIMRVLQAARMLTDNHLAPKEEYGLVVRLLTGIGRYNEMT
YIFDLLHQKHYFEVLMRKKLDPSGTLKTALLDYIKRCHPGDSEKHNMIALCFSMCREIGE
NHEAAACIQLKLIESQPWEESLKDGAQLKQLLLKALTLMLDAAESYAKDSCVRQALHCKR
LTKLITLQIHFLNTGQNTMLINLGHQKLMDCIMALPRFYQASIVAEAYDFVPDWAEVLYQ
QVILKGDFSYLEEFKQQKLLKPNIFEDISKKYKQHQPTDRVTENLKKLLSYCEDIYLHYK
LAYEHKFFEIVNVLLKDPQTGCCLKDMLAG
NT seq
7293 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaagctggggcccggaagtgttgcctcccccggctgtgccggggccatggag
cgggttctacctatgctgctggtgcagatccctgccaaggagacggcgcagctgggatcg
cgggcgcagctgcaccgagagcaggaggccctggggagcctgacggctgcgggcagtctc
caagtgctctccctggcgccgggcagtaggggtggaagcagctgctgcctcccaggcccc
tttgggcacttcgcatgggaggactctcatgacagcagcatatccacaggcaagcccaag
ctgcttgctgttagtgaagattatgaactgctcacatatgaatttgatctgaaagatgga
ggatgcactgcaaccttattacacagctgttgtgggaagacactgcaaaagctcattgaa
gatcaaggagtcagtatttccttcaaatctttgagaattctgtcatttcacaagacagca
ttactgctcatcaacagctgtctcatcgtccgcattgactttgcggggagagaatctggg
agtgtactggactgcttctcactgcccttgccggcacagacggcagacaccgttattgac
gtgcagctttgcaggggacttctttttgttctgagtacattaggctggatctatattttt
gacactgcagatggcatgcacgtagctcatgtggacttggcttttctccaaggagattct
gagcagcaggaggcagccagcgtttcttccttcacctcattgaaagtgtctccagactta
gatgttttggtgattgttagttcatccagtactgctgttgcccttaacctaaatttgtat
ttcaggcaacacccaggagacctactatgtgaaagaacactggaagaccttccaatcgaa
gggcctactgggttagatgaggacgaccttgctagctctgtccacagcatgaaactgacc
aaagtcgcctttcaagtcgataggtcttggagggcccagctgtcatcattgaatgaaaca
acaaggagccagaaaccagaggcttcctgttgtgctccctggttccagggtgttttacgt
gtggagtccccaggatctggaaaccacactcccattgtgccaaaccacgttttcatccca
ggggatgtcacatatggtcagtgtgcttttccacagaaggagcacatcaagactagtgat
ccaagaagaccatgggagaccatgcacctgagtgaacaagagcagcccgcagagctcacg
tgtctgtctgtgaccgggtttactgcactgtttacctgggcagtaggaaagaccagctgc
accattgtcctctgggacctggagacccagagcatgcagtgtttttctcttagccagaag
tgtactcctgtagagagcagtggagaccagcagctgtgccttgttttgacagaaagtggt
ctctctctgattttgtttggtctaactcaagaggagtttttgaacagactaatgatccat
ggaagtgccagcactgtggactccctttgtcatctcaatggttggggacggtgctcaatt
cctatacatgctctagaggctggcatagaaaatcggcagctagacacagtagatttcttc
ttgaagagcaaggaaaatcttcttactccatcttcaaaacctcctgttcctgatcagctg
catcacttttcatcccagttatatttaagacaggtggaagagatgacaccagccctggat
ttgctttgctcagcaattagagaaagtgactctgagacccaaagcaagcactttgcagag
cagctgcttcacctcacactgtctttcctcaacaaacaaataaaggagctttttgttcac
actgaagagatagatgagcatctacagaaaggagtggacattttgaccagctacatcagt
gaacttcggactttcatgataaagtttccttggaagccagcagacgccactgatgaatat
gaagtaaacaaagatgtcctcacagtaaaggagggcaaaatttgggaaaaacttaacttt
gaggaagttattgcagatgccattttaagtaacaaaatagcagaggcacaaactttcttc
aggattactaatcattctgctcaacgactggaggagctggtcagggtaggcctggacttg
gtgtttgacagtttgaaaaagagtaatgcagaggaagcctccgtgctcttgaggaatatg
ggcttcaatgtggaagatgagttgctcaagatatgcttttatacaactgataaaaatata
cgggactttttggttgaagtcttaaaagaaaaggaatgtttttctgaaaaagaaagaaga
actgtagattttgttcttcaagttgaaaagttttattcaggacgtttcccagaaaatgtg
cagatgcagtcctctcccagctattggataaaggaacaggactatttcaagcacaaatct
atcttggacacattcctcaagtgtgatcaaaaagatgagtttaatgagcagcaccataaa
attgcgctgaattgggctcactggtgggatcagcaaacacaagaatgcatccttctcccc
aggataagtccagaagaatacaaagcacattccccagatgccctctggagatatctcacg
gctcgccatgactggtcaaccattagcttgtggattgaagaatttcagacccaggaaact
gggccacctcagcagaacaagtggccccctctgagcactggcatcattgatcaaaatact
tgctgcaacaattacatgaggaataagattttagacaagctggccaggagtggggttttt
cttgcatctgaattagaagactttgaacttttccttctgagactcagccggattgggggc
gtaatgcaagataccctccccatgcaaagctacaaatcctcaggagggtgggattttcac
tcccgcttcatcctctactgtctagagcacggcctacagcatcttctctacgtctatctt
gactattacaaacttagtcctggaaattgtccttttttggaaaagaaagaactacatgaa
gctcacccttggcttgaatttttggttcagtgtcggcaagtttccagtaacttaacagat
cccaaactgatcttccaggctagccttgcaaatgctcagattttgattcccaccaatcag
gccagtgtaagcagtatgctgttggaaggacacaccctcctggcccttgctactaccatg
tatgctcccggtggtgtcagccaggtcattcagagtgaaggaagtgagagctgcttgaag
aaagtggacccccagctattgaagatggcgttaacaccttacccaaagctcaaagctgcc
ctgttcccacagtgcactgctcctagtattctgccctcggatattactctctaccacctc
cttcagtctttgccgccctttgatcctagcagattgtttggctggcagtctgccaacaca
ctagcaataggagatacagccaaccatctcccacatttctccagccctgacctggtgagt
aaatacgctgtggtagaacgtctgaattatgcatattatttacatcatggacgcccatca
tttgcctttggtacttttctggtccaggagttaatcaagagtaagactcccaaacaactg
atccagcaagtaggcaaggaggcctataccttagggctcgcttccttccacagcccttca
gtaggggctgcctgtgtttgcttcttagaattgcttggtcttagcagcctcaagctcaga
gttgacatgaaaatggcaaatgtgattctgggctacaagtgtagaaatgaagatggtcac
cccagctttatcagagagtctctagctgaaaaactgtctaagcttgcggacggtgacaag
gccaccacagaagagttgctggttctcttggaagaaggcgtgtggaataacatcacgcag
caaggtttgaacaggttgtgcagtgaatccagcagccagtggacattagtgttacagttc
tgcacagtccacaatataaaactgagcatgtcctaccttagagaatgtgccaaagccaat
gattggctgcagttcctggttcatagccaactccataactatcacctggaagaggtgaag
tctcttcttcagaactttagcccagtccttcagagccacttgaagctggcttttgaaaaa
ctgtcatccgggcccatctctagagtggatggtggccaagaccacaagtacctccaggaa
ctccagagaaacaaagaggagatgagggatttctttgaaattctccaccagtgctcggaa
gagtcagcctcttggtgctggctcctcacagaagcagtgaaacagcgggctcccatcctc
agtgtcctggcctcttgtttccaggaggccagtgctgtgccctgcctgtgtgtttggatt
gtcacctctgtgggggacagggttgcagctgaagcaatggaacacatccaggcctctgta
gaagatcatccatggagcctcgacgacctgtccattatctggagaactgtattgacaagg
cagaagagccacactctcatccgaggcttccggcttttcattaaggattccccacttctg
ttgattatggagatgtatgaattgtgtatgttcttcaagaattacgagaaagccaaagtt
aagcttgtggagttccagaaaagccttgagacgcttgacacagcggctacgagggtcctt
cccatcatacctgccacgtggatgaaggatcaggtgtgtttccttttgaaacttatgctg
cagcagtgccagacgcagtatgagctggggaagacactccagctgcttgtcgggactgag
catctcttctctgatggtccagatgtgcataagctctgtgtcctcagccaaatcttgaag
gatacacctatagccatcaacccagaagttattaccagctacagcgctgagaattttcag
catgagtgtagatctattttggaaaagctaaaggcagatggacagtttgctgtggccacg
agagtggcagagttagcagcactgcctgcggacagcctggtgattgatcagctaacccag
gaaatgaagaccctgaaacacactcagcagtggcccctcaaacacgcaagaattgacttc
tggaaaaaatgccacgaaacttttaagaaaaattccatttcaaacagggcagcctcttcc
ttcttctccagtcaggtccctgtggtgagtgagcatcccgctgagcaagaccgtcttgaa
gagcgccacctgctgctcctgctggtagggcactggcttgcccaagaagagcctgttcct
ttggaggagctggaagagctggagaaacaggcctggatctgccgcatcacacagcacacc
cgcccagaggaagcccagaccagcccgtctcagcagaagtcagctggtgtggaactctcc
ttcggtagcttagccgatgagttttccttctccaagcttgctgccttgaacacatccaag
tacttagaccttaatggtcttccatccaaagacaagtgtgagagcacactggattggaag
gagcaggagtccctgagtgttctgattggacacctgctggatggtggctgtgtgcaggaa
gctagcagggcgtgccggtatttccacttctacagtcaggatgtggcgctagtgctgcac
tgtagagccttggcgtccgcagaggccagcatggaagacctgcactcagagatccgtgct
ctgctcccaagtgctggcctgcctgaggaccaggagagccctagtgtccctcttccgaaa
gtccacagcgcttcaggtttggatagtcagtcgtttatgatggtgccacctacggatgag
gtggcaaggaatctccaagctctcacaagcaagtgcctccatgggaagaactactgccgg
caggtcctctgtctgtatgaacttgccaaggagctgggctgctcctatgcagatgttgct
tccagggacagtgaagctgtgctccggacaatcttggcttctcagcggcctgacagatgc
agacaagcccaggtcttcatcagcacccagggccttgagccagacatggtagctgaacta
gtggctgaagaggtgacacgagagctgctgaccccatcagggggaacaggagaaaagcag
cctttcaacccagcagaaagccagacatttcttcagctaactgctctatgtcaagaccgc
acactggtaggcatgaagttgctggacaagattccctccgtcccccatggggagctgtcc
tgcaccacagagctcctgatcctggcccatcactgcctcacacttacgtgccacatggag
ggcatcatgagagtcctgcaggctgcccggatgctcacagacaaccacttggctcccaag
gaggagtatgggctggtggtacgcctcctcactggcattggaaggtacaatgagatgaca
tacatatttgacttgctgcatcaaaagcactattttgaagttctgatgaggaagaagcta
gatccgagtggtaccctgaagacagccttgctagactacatcaaacgctgccaccctgga
gacagcgaaaagcataatatgattgccctgtgcttcagcatgtgtcgggagataggggag
aaccatgaggcagcagcctgtatccaactgaagctaattgagtctcagccctgggaggaa
agcctcaaggatggagcccaactaaaacagctcctgcttaaagccctgactctgatgttg
gacgcagcggaaagttatgccaaggactcctgtgtgcgacaggcgctacactgcaaacgg
ctcaccaagttaataacactacagattcactttctgaacactggtcagaacacaatgctt
atcaacttgggccatcagaagctaatggactgtatcatggccctacccaggttctaccag
gcttctattgtagctgaggcctatgactttgttcctgattgggctgaagttctctaccaa
caagtgattcttaaaggagactttagctacttagaagaatttaaacagcaaaagttacta
aaacccaatatatttgaagacatttccaaaaaatataaacaacaccagcctaccgacagg
gtcacagaaaatctgaagaagttactttcatattgtgaagatatctacctgcattacaag
ctggcatatgaacacaaattctttgaaattgtgaatgtgcttctgaaggaccctcaaaca
ggatgctgtcttaaagatatgcttgcaggttag
DBGET
integrated database retrieval system
