Mesocricetus auratus (golden hamster): 101839677
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Entry
101839677 CDS
T08306
Symbol
Parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
maua
Mesocricetus auratus (golden hamster)
Pathway
maua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101839677 (Parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maua03019
]
101839677 (Parn)
Enzymes [BR:
maua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101839677 (Parn)
Messenger RNA biogenesis [BR:
maua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101839677 (Parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
101839677
NCBI-ProteinID:
XP_040586709
LinkDB
All DBs
Position
Unknown
AA seq
624 aa
AA seq
DB search
MEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKH
SMDFLLFQFGLCAFKYDHTDSKHITKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQG
FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQRKFIDQVIEK
IEDFLQNKEKKSLDLEPCTGFQRKLIYQTLSWKFPKGIHVETLETEKKERHIVISKVDEE
ERKRREQEKYAKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPAD
LKEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFP
SYDTASEQLHEAGYDAYITGLCFISMANYLGSLLGPPKMCVSARSKLIEPFFNKLFLMRV
MDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQ
PEQVQIAVNTSKYAESYRIQTYAEYVGKKQEDKQVKRKWTEDSWKEADRKQPKVSDPCSH
TNSFAATGTTGKRNLSPDPGEAGSEDRESEEMSDSELEQIDSCADPFPEGRKKAKKLKRM
KKELSLAGTVAESSAMLFEVPDTW
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggagataatccggagcaattttaagattaatcttcacaaagtgtaccaggccatagag
gaggctgacttcttcgccatcgatggggaattttcaggaatcagcgatggaccctcagtc
actgcattgacaagtggttttgacacccctgaagagagatatcagaagcttaaaaagcat
tctatggactttttgctgtttcagtttggcctttgcgcttttaagtatgaccacacagat
tccaagcatataacgaagtcatttaacttctatgttttccccaagcctttcagtaggtcc
tcaccagatgtcaagtttgtttgccagagctccagcatcgacttcctagcaagccaaggg
tttgacttcaataaagtgttttgcagtggaattccatatctgaatcaagaagaggaaaga
cagctgagagaacaatttgatgaaaaacgttctcaggccaatggggcaggagctctggca
aaatgtcctgtgacaatccctgaggatcagaggaagtttattgaccaagtaatagagaag
atagaggatttcctacaaaacaaagagaagaagagcttggatctagagccgtgcactggg
ttccaaagaaaacttatttatcagactttgagttggaagtttcccaaaggcattcatgtt
gagacattagagactgaaaagaaggagagacacatagttatcagcaaagtggatgaagag
gagcgcaagagaagagagcaggagaagtacgcaaaggagcaggaggaattgaatgatgct
gtgggattttcaagagtcatccatgccattgctaattcggggaagctggttgttggacac
aatatgctgctggatgtcatgcacacaattcaccagttctactgccctctgcctgcagac
ctcaaagagtttaaggagatgacaacatgtgtcttccccagactcttggatactaagttg
atggccagcacacagccttttaaggatatcattaacaacacatcccttgcagagttggaa
aagcggttaaaagagacaccttttgaccctcccaaagttgaaagtgcagaaggctttcca
agctatgacacagcttctgagcagctccatgaggcagggtatgatgcttacatcacagga
ctctgcttcatctccatggcaaattacctaggttctttacttggacctccaaaaatgtgt
gtgtcggccagatcaaaactcattgaacccttttttaacaagttatttcttatgagggtc
atggacattccatatttaaacttggaagggccagacttacagcctaaacgtgatcatgtt
ctccacgtgacattccccaaagaatggaaaaccagcgacctttaccagctcttcagcgcc
ttcggtaacatccagatatcttggattgatgacacatcagccttcgtttctctcagccag
ccagaacaagtacaaattgctgttaacaccagtaaatatgcggaaagttaccggatccag
acctatgctgagtatgtgggaaagaagcaggaagacaagcaggtcaagaggaagtggacg
gaagacagctggaaggaggcagacagaaagcaacccaaagtgtcagacccctgttcccac
accaacagcttcgcagcaactggcacgactggaaagagaaatctgagtcctgacccaggg
gaagctggctcagaggacagagaatcggaggagatgtctgactctgagcttgaacagata
gattcctgtgcagaccccttcccagagggaaggaaaaaggccaagaagttaaaaagaatg
aagaaagagctttccttggcaggaactgtcgcagagagctctgccatgctctttgaagtc
cccgacacgtggtag
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