Mesocricetus auratus (golden hamster): 101842574
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Entry
101842574 CDS
T08306
Symbol
Mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
maua
Mesocricetus auratus (golden hamster)
Pathway
maua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101842574 (Mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maua03019
]
101842574 (Mtrex)
03041 Spliceosome [BR:
maua03041
]
101842574 (Mtrex)
03009 Ribosome biogenesis [BR:
maua03009
]
101842574 (Mtrex)
03016 Transfer RNA biogenesis [BR:
maua03016
]
101842574 (Mtrex)
Enzymes [BR:
maua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101842574 (Mtrex)
Messenger RNA biogenesis [BR:
maua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101842574 (Mtrex)
Spliceosome [BR:
maua03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101842574 (Mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
101842574 (Mtrex)
Ribosome biogenesis [BR:
maua03009
]
Eukaryotic type
Pre-60S particles
Helicases
101842574 (Mtrex)
Transfer RNA biogenesis [BR:
maua03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101842574 (Mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
101842574
NCBI-ProteinID:
XP_005065590
UniProt:
A0A1U7QDY1
LinkDB
All DBs
Position
Unknown
AA seq
1041 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAGAKKGKEKEKEKWKGPPASTDKAGKRLDAKLQSESTSGGK
NKRDVDVEGTDEPIFGKKPRIEDSINDDLSLADLMPRVKVQSVETVEGCTHEVALPADEE
YIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALRE
KQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSE
VMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHK
QPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQ
KGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE
EVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFA
TETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDE
KMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGV
VEKVKNSEEQYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVK
VKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPD
EKGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPID
DMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKK
ARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLS
AEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSS
FKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELEN
KFAEGITKIKRDIVFAASLYL
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggacgagcttttcagcgttttcgaggacgattcgaccacagcg
ggagccaagaaaggcaaagaaaaggagaaagagaaatggaagggcccgccggcctccaca
gacaaggccgggaaacgattggatgccaaattacaatcagaatcaaccagtggtgggaaa
aacaagagagatgtagatgttgaaggcacagatgaaccaatttttggcaagaaacccagg
atagaagactctattaatgacgacctaagtttggcagacctgatgcccagagtcaaggta
caatcagttgagacagttgaaggttgtacacatgaggttgctcttcctgcagatgaggaa
tatataccacttaaacctcgagttggaaaggcagcaaaggaatacccattcattcttgat
gctttccaaagagaagccattcagtgtgtcgataataatcagtctgtgttagtatctgct
cacacatcagcgggaaaaactgtgtgtgctgagtatgctattgcattggccttaagggaa
aagcagcgtgtaatatttaccagcccaattaaggctctcagtaaccagaaataccgtgaa
atgtatgaagagtttcaagatgttggtctgatgactggagatgttactattaatcctaca
gcatcttgtcttgttatgactacagagattttgagaagtatgctgtatagagggtctgaa
gttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattcagag
cgtggtgtagtatgggaagaaactattattttgctgccagataatgtccattatgtcttt
ctttcggctactattccaaatgctcgacagtttgctgagtggatttgccacctacataaa
cagccctgtcatgtaatttatactgattatcgacctactccattgcaacattacatattt
ccagcagggggagatggccttcaccttgtggtcgacgaaaatggtgacttcagagaagat
aattttaacactgcaatgcaagtgcttcgggatgcaggtgatttggccaaaggtgaccag
aagggtcggaaaggaggaacaaaaggtccatcaaatgtgttcaaaattgtgaagatgatt
atggaaaggaattttcaacctgtgattatcttcagttttagtaagaaagattgtgaagca
tatgctcttcaaatgactaagttagatttcaacacagatgaagaaaagaagatggttgaa
gaagtattcaataatgcaattgactgcttgtctgatgaagataaaaagctccctcaggtt
gaacacgtgcttcctcttttaaaacgggggattggtattcaccatggtggtttacttcct
attttgaaggaaactatagaaattctcttttctgaaggattgataaaggccttatttgcc
acagagacttttgctatgggaattaatatgccagctagaactgttttatttacaaatgct
cgtaaatttgatgggaaggattttagatggatttcctctggtgagtacatccagatgtct
ggccgtgctggaaggaggggaatggatgacagaggaattgtaattcttatggtagatgaa
aagatgagcccaacaattggaaaacaactacttaagggctcagctgatcccctgaatagt
gctttccatctgacctataacatggttttgaacttactacgagtagaagaaattaatccc
gagtacatgctggaaaaatccttctaccagtttcagcattatagagcaattccaggagta
gtagagaaggtcaagaactctgaagaacagtataataagatagtgatccccaatgaagaa
aatgtagtcatctattacaagattagacagcaacttgccaagctgggaaaagagattgag
gaatatattcataaaccaaaatactgcttaccatttctacagccaggtcgcctggtaaag
gtgaaaaatgaaggagatgattttggctggggagtagtagtcaatttctcaaaaaagtca
aatgttaagcctaattctggcgagctggatcctttgtatgtggtggaagtactcctgcgc
tgtagcaaagaaagcctgaaaaattccgctactgaggcagcaaagcctgcaaaacctgat
gagaaaggagagatgcaggtcgttccagttttggtgcatctcttatctgccatcagcact
gttaggctttacatcccaaaagaccttcggcctgtggacaacagacagagtgttttaaaa
tccatacaggaagttcagaagcgttttcctgatggcgttcctttgttagatcctattgat
gatatgggcattcaggatcaaggactgaaaaaagtcattcagaaagtagaggcttttgag
catcgcatgtactcacacccacttcacaatgatccaaatttggaaaccgtgtatacactt
tgtgagaaaaaagcacagattgcaatagatattaaatctgcaaagcgagaactgaagaaa
gcaaggactgtcctacaaatggatgaactcaagtgtcgcaagcgtgttttaagaaggttg
ggctttgctacatcttctgatgtcatagagatgaaaggacgtgtggcttgtgagataagc
agtgctgatgagctccttctaacagagatgatgtttaatgggcttttcaatgacctttct
gcagaacaggcgactgcactattaagttgttttgtgtttcaagagaattctagtgagatg
cccaaattaacagaacagttagctggaccacttcgacaaatgcaggaatgtgctaagagg
attgcaaaagtttcagcagaagcaaaactagagattgacgaggaaacttacctaagctca
ttcaaacctcacctgatggacgtggtgtatacctgggccactggagccacctttgcccac
atctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctggaa
gaactacttcgacagatgtgtcaagcagcaaaagccatcggaaacacagagctggagaac
aagtttgctgaaggaatcaccaaaatcaagagggatattgtatttgctgccagcctctac
ttataa
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