Mycolicibacterium aubagnense: MAUB_22440
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Entry
MAUB_22440 CDS
T07121
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
maub
Mycolicibacterium aubagnense
Pathway
maub03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
maub00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MAUB_22440 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maub03021
]
MAUB_22440 (rpoC)
03400 DNA repair and recombination proteins [BR:
maub03400
]
MAUB_22440 (rpoC)
Enzymes [BR:
maub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MAUB_22440 (rpoC)
Transcription machinery [BR:
maub03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MAUB_22440 (rpoC)
DNA repair and recombination proteins [BR:
maub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MAUB_22440 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
BBX84371
LinkDB
All DBs
Position
complement(2251879..2255835)
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIVCERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDTEMRHNELSTLEAEMVVEKKAVEDQRDLDLAERSQKLEAD
LAELEKEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFSKLAPKQLIVDEVL
YRELQDRYGEYFQGAMGAESIKKLIETFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA
AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFFLTTLIEGDLGEFV
PATKDGAEQGVYSSPAEAIMAMDRGALSVRAKIKIRLTHLRPPAEIEAQLFENGWKPGDA
WTAETTLGRVLFNELLPKGYPFVDKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAGF
HWATRSGVTVSMADVLVPPQKQEILERYEGQADAIEKKYQRGGLNHDERNESLVKIWQQA
TEEVGKALEDYYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGVTVTL
AEVQADGSLVRDAHVETSAYARTLATDAVDGGGNVIVERGHDLGDPAIEALLAAGISTVK
VRSVLTCATGTGVCAKCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVT
GGADIVGGLPRVQELFEARVPRNVAPIADVAGRVQLEEDDKFYKITIVPDDGGEEVVYDK
LPRRNRRLRVFKHDDGTERLLADGDHVEVGQQLMEGSANPHEVLRVQGPREVQIHLVKEV
QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERSEFETENRRVVAEGG
EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLI
PAGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgcatcggtctcgcgaccgcggacgacatc
cgcaactggtccttcggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgaaaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcgtctgcgagcgctgtggcgtc
gaggtgactcgcgccaaggtgcgtcgtgagcgcatgggccacatcgagctggccgcgccg
gtcacgcacatctggtacttcaagggcgtgccgtcgcgcttgggctacctgctggacctg
gccccgaaggatctggaaaagatcatctacttcgcggcctacgtcatcacctcggtcgac
accgagatgcggcacaacgagctgtccacgctcgaggccgagatggtcgtcgagaagaag
gccgtcgaggatcagcgggatctggacctggccgagcgttcgcagaagctcgaggccgac
ctcgccgagctggagaaggaaggcgccaagtccgacgtccgccgcaaggtgcgcgacggt
ggcgagcgcgagatgcgtcagctccgcgaccgggcccagcgtgagctggaccggctcgac
gagatctggaccaccttcagcaagctggctccgaagcagctcatcgtcgacgaggtgctg
taccgcgagctgcaggaccgctacggcgagtacttccagggcgccatgggcgccgagtcg
atcaagaagctcatcgagaccttcgacatcgacgccgaggccgagtcgctgcgcgacacc
atcaagaacggcaagggccagaagaagctgcgcgccctcaagcgtctgaaggtcgtcgcc
gcgttccagacgaaccgcaactcgcccatgggcatggtgctcgacgccgttccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtcatcaaccgcaacaaccggttgaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtcggtggacgcg
ctgttcgacaacggccgtcgtggccggccggtcaccggtccgggcaaccgtccgctcaag
tcgctgtccgacctgctcaagggcaagcagggccgcttccgtcagaacctgctgggtaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgtggtctgccgaagctgatggctctggagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtggagcgtcagcgt
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcacctacgctgcaccgcctgggtatccaggccttcgagccgcagctggtggaaggcaag
gccatccagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctcccgctgtcggcggaggcgcaggccgaggcgcgcatcctgatgctg
tcgtcgaacaacatcctgtcgccggcatcgggccgcccgctcgccatgccgcgtctggac
atggtgacgggtctgttcttcctgaccaccctgatcgagggtgacctcggcgagtttgtg
ccggccaccaaggacggcgctgagcagggtgtctacagcagcccggccgaggccatcatg
gccatggaccgcggtgcgctgtcggtgcgggcgaagatcaagatccggttgacgcacctg
cgtccgccggccgagatcgaggcccagctgttcgagaacggctggaagccgggcgacgcg
tggaccgcggagaccaccctgggtcgcgtgctcttcaacgagctgctgccgaagggctac
ccgttcgtcgacaagcagatgcacaagaaggtgcaggcggcgatcatcaacgatctcgcc
gagcgctacccgatgatcgtcgtggcgcagaccgtcgacaagctgaaggatgccggtttc
cactgggcgacccgctcgggcgtgacggtctcgatggccgacgttctggtgccgccgcag
aagcaggagatcctggagcgctacgagggccaggccgacgcgatcgagaagaagtaccag
cgcggtggtctgaaccacgacgagcgcaacgagtcgctggtcaagatctggcagcaggcc
accgaagaggtcggtaaggctctggaggactactacccggcggacaacccgatcatcacg
atcgtgaagtcgggcgccaccggtaacctcacccagacccgcaccctggccggcatgaag
ggtctggtgacgaacccgaagggtgagttcatcccgcgcccgatcaagtcgtccttccgc
gagggcctgacggtgttggagtacttcatcaacacccacggtgctcgtaagggtctggcc
gataccgcgctgcgtaccgccgactcgggttacctgacccgtcgtctggtcgacgtgtcg
caggacgtcatcgtccgtgagaccgactgtgagaccgagcgcggcgtcaccgtcactctg
gccgaggtccaggccgacggttcgctggtgcgcgacgctcacgtcgagacgtccgcctac
gcgcggaccctcgccacggacgcggtcgacggaggcggcaacgtcatcgtcgagcgcggg
cacgacctgggtgatccggcgatcgaggccctgctggcggcgggtatctccaccgtcaag
gtgcgctcggtgctgacctgtgccaccggcaccggcgtctgcgccaagtgctacggccgc
agcatggccaccggcaagctggtcgacatcggtgaggccgtcggtatcgtcgccgcccag
tcgatcggtgagcccggtacccagctgacgatgcgtaccttccaccagggtggtgttacc
ggtggcgccgacatcgtcggtggtctgccgcgcgtgcaggagctgttcgaggcccgcgtg
ccccgcaacgtcgctccgatcgcggacgtggccggccgggtgcagctggaagaggacgac
aagttctacaagatcaccatcgttcccgacgatggtggcgaggaagtcgtctacgacaag
ctgccgcggcgtaaccgtcgcctgcgcgtcttcaagcacgacgacggcaccgagcgcctg
ttggccgatggtgaccacgtcgaggtcggccagcagctcatggagggttcggcgaacccc
cacgaggtgctccgcgtccagggcccccgcgaggtgcagattcacctcgtcaaggaggtc
caggaggtctaccgcgcacagggtgtgtcgatccacgacaagcacatcgaggtcatcgtg
cggcagatgctgcgtcgtgtgacgatcatcgactcgggcgcgacggagttcctgcccggt
tcgctgaccgaacgcagcgagttcgagaccgagaaccgtcgcgtcgtggccgagggtggc
gagcccgcggccggacgtccggtgctgatgggtatcacgaaggcatcgctggccacggac
tcgtggctgtcggcggcgtcgttccaggagaccactcgcgtgctgaccgatgcggccatc
aactgccgtagcgacaagctgcagggtctgaaggagaacgtgatcatcggtaagttgatc
ccggctggtacgggcatcaaccggtaccgcaacatccaggttcagccgaccgaagaagcc
cgcgctgcggcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggc
caggccactggtgctgccgtgccgctggatgactacggctacagcgactaccgctag
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