Mycolicibacterium aubagnense: MAUB_41230
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Entry
MAUB_41230 CDS
T07121
Symbol
ligD_2
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
maub
Mycolicibacterium aubagnense
Pathway
maub03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
maub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MAUB_41230 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maub03400
]
MAUB_41230 (ligD_2)
Enzymes [BR:
maub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MAUB_41230 (ligD_2)
DNA repair and recombination proteins [BR:
maub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MAUB_41230 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BBX86250
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All DBs
Position
4261576..4263804
Genome browser
AA seq
742 aa
AA seq
DB search
MRLTNPDKVLYPSTGTTKADVFDYYLAVADAMLPHIAGRPVTRKRWPNGVAQQPFFEKQL
ASSAPEWLERGAITHRSGTTVYPIIDTPEGLAWIAQQASLEVHVPQWRFVGAGGRSGAGD
VLAPGPATRIVFDLDPGEGITMAQLCGVARAVRELIAGMDLEAYPVTSGSKGVHLYVPLA
SPVSSRGASAVAKRVAQQLESSMGGLVTATMTRSLRAGKVFLDWSQNSSAKTTVAPYSLR
GRDEPTVAAPRTWDELDDPELRQLRFDEVLARLARDGDLLAAMDADAPVADRLTTYRSMR
DPGRTPEPVPAAQPASGQNNRFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPDTSTVN
HLAVHTEDHPLEYATFEGDIPKGEYGGGHVSIWDSGTYDTEKFRDSGSGGEVIVNLHGNR
VSGRYVLIQTDGKNWLVRRMKEQRLQPMLATHGSVRRLSSDQWAFEGKWDGYRLLVEADH
GRIRLTSRSGRDITGEFPQLQSLAADLADHHVILDGEVVALQDGVPSFQAMQNRGPRSHI
EFWCFDILSLDGRDLTRAKYRDRRKLLEALASDGALTVPPLLPAEDPLEVASGRGFEGVV
AKKWDSGYRPGRSEAWVKDKFWRTQEVVIGGWRAGEGGRTSGIGALLVGVPDEHGLQFAG
RVGTGFTDKMLGDLRAMLAPLEIIESPFTAPLSALDAKGVTYVRPEVVGEVRYSERTSDG
RLRQPSWRGLRPDKTPAEVTWE
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
gtgcggctgaccaacccggacaaggtgctctacccgtcgacgggcacgaccaaggccgac
gtcttcgactattacctcgccgtcgccgacgcgatgctgccgcacatcgcgggccgtccg
gtcacccgcaaacggtggcccaatggtgttgcgcagcagccattcttcgagaagcagctg
gcgtcgtcggcgccggagtggctcgaacgcggcgccatcacgcatcgcagcgggaccacc
gtctacccgatcatcgacactccggaggggctggcctggatcgcccagcaagcgtccttg
gaagtgcatgtgccgcaatggcgctttgtcggggcgggtgggcgaagcggggcgggcgat
gtcctggctccgggacccgccacgcgcatcgtgttcgacctcgatcccggcgagggcatc
accatggcccagctgtgcggggtggcccgcgcggtgcgcgaactcatcgccggcatggac
ctggaggcgtatccggtgaccagcggcagcaagggtgtgcacctctatgtgccgctggcc
tcgcccgtcagctcgcgcggtgcgtcggccgtcgccaaacgtgttgcccaacaactcgaa
tcatccatgggtgggctggtcaccgcgaccatgacccgcagcctgcgggccggcaaggtg
ttcctggactggagtcagaactcctcggccaagacgacggtggcaccgtattcgttgcgc
ggtcgcgacgagccgaccgtcgcggcgccgcgcacctgggacgaactcgacgatccggag
ttgcggcagctgcggttcgacgaggtgctggcccgcttggcccgtgacggtgatctgctc
gccgccatggatgccgatgcgccggtcgccgaccggctcaccacctaccgcagcatgcgg
gacccgggccggacaccggagcccgtgccggcggcccagcccgcgtcgggccagaacaat
cggttcgtcattcaagaacatcacgcccgccggctgcactacgacttccggctggaacgc
gacggcgtgctggtcagttgggctgtgccgaagaaccttccggacacctcgaccgtcaac
cacctggcggtgcataccgaagaccatccgctggaatacgccaccttcgaaggcgatatc
cccaagggcgaatacggcggtgggcacgtctcgatctgggactcgggcacctacgacacc
gaaaagttccgggactcaggctctggcggtgaggtgatcgtcaacctccacggcaaccgg
gtctccggacggtacgtgctcatccagaccgacggtaagaactggctggtgcgccggatg
aaagagcagcggctgcaaccgatgctggcgacccacggatcggtgcgtcgactgtcttcg
gaccagtgggccttcgagggtaagtgggacggctaccggctcctcgtagaggccgaccac
ggccggatccggctcacctcgcgcagcggtcgcgatatcacgggggagttcccgcaattg
cagtcgttggcagccgatctcgccgatcaccacgtgatcctggacggtgaggtggtggca
ttgcaggatggcgtaccgagtttccaggccatgcagaaccgcggtccccgcagtcacatc
gaattctggtgtttcgacatcctgtccctcgacggacgtgacctgactcgcgcaaagtac
cgagatcggcgaaagctgttggaagcgctggcctccgatggtgcgctgacggtaccgccg
ctgctgcccgccgaagatcccctggaggttgcgagtggccgcggcttcgaaggagtggtc
gccaagaaatgggattccggatatcggcctggccggtcggaggcgtgggtcaaggacaag
ttctggcgcacacaggaagtggtgatcggcggctggcgcgccggggaaggcggccgcacc
agtggcatcggggcactgctggtcggcgtgcccgacgagcacggtctgcagttcgccggg
cgcgtcggcaccgggttcaccgacaagatgctgggcgacctgcgggcgatgctggcaccg
ctggaaatcatcgaatcaccttttaccgcaccgctttccgcattggatgccaaaggcgtg
acgtatgtccgacccgaggtggtgggggaggtgcgctacagcgagcggacctcggatggc
cggttgcggcagcccagctggcgtgggctgcgtccggacaagacaccggcggaggtcacg
tgggagtga
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