Mycolicibacterium aubagnense: MAUB_49110
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Entry
MAUB_49110 CDS
T07121
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
maub
Mycolicibacterium aubagnense
Pathway
maub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MAUB_49110 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maub03019
]
MAUB_49110 (rne)
03009 Ribosome biogenesis [BR:
maub03009
]
MAUB_49110 (rne)
Enzymes [BR:
maub01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MAUB_49110 (rne)
Messenger RNA biogenesis [BR:
maub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MAUB_49110 (rne)
Ribosome biogenesis [BR:
maub03009
]
Prokaryotic type
rRNA processing factors
MAUB_49110 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
BBX87038
LinkDB
All DBs
Position
5066430..5069489
Genome browser
AA seq
1019 aa
AA seq
DB search
MADDAQLEARSEDAGSAAEPIELPERLRIFSLARILGTTSKKITETLAGVDGRPRNPAST
VNRAEAERVRDLLGLGGEAAEVTAPAAPVESAEQSADAADEDAAEVAVEAVDVAEAAVEI
AREAAEAGDAQPDEDEPESRLLLETVPAAPTTSAEPADYLPLFVAPQPVTFRPPAEPDDF
ADDDNDDITDDVADSADDGGEDGSDDDSERPANRRRRRGRRGRGRGRGEQSSDDATDADA
EGEAQDASAEGDEDADAEGDEDSGDDDANASDGASRRRRRRRRRKSGGAGGDDADGEAAS
ADDPPNTVVHERAPRAKSDNNEIQGITGSTRLEAKRQRRRDGRDAGRRRPPILSEAEFLA
RREAVERVMVVRDKVRTEPPHEGARYTQIAVLEDGVVVEHFVTSAASASLVGNIYLGIVQ
NVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGNNRKIEQALKPGDYVVVQVSKDPVG
HKGARLTTQISLAGRYLVYVPGASSTGISRKLPDTERQRLKEILKEVVPADAGVIIRTAS
EGVKEEDIRADVNRLQERWTEVETTAAETKAKAAGAAVALYEEPDVLVKVIRDLFNEDFS
KLVVSGDEAWNTISNYVNSVAPELLSRMSQYEKSGGAQSDVAGNPAPAGPDVFSVYRIDE
QLAKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNLEAAEEIVR
QLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRL
GTGLIEAFSTTCTHCAGRGIMLHGDPVDTASANGRKTEAAGGSAGGGGRRSKRAKKVAPP
VEEAPVAKVPPHPQGEHPMFKAMAAANGKHEDELDDEDLTEDIAEEVTDGDVVESAEALI
ELDQADDLDADEADEDEDDAEDDELEVELDEDFEDSDDDSDELDLDEDEDDSDEDSDDDD
SDDDDSDEEDSDDDEDEDEDDEEEADQPAEPAVSAAPVVRQRRRAAARPAGPPVGGVDG
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
gtggccgacgatgcccaacttgaagcccgatccgaagacgccggcagcgccgcggagccg
atagagctccccgagcgcctgcggattttctcgctggcccggatcctcgggaccaccagc
aagaagatcaccgagaccctcgccggggtcgacggtaggccccgcaatcccgcttccacg
gtgaaccgtgccgaggccgagcgggtccgcgacctgctgggcctcggtggcgaagccgcc
gaggtcacggcccctgccgcgcccgtggagtccgccgagcagtccgccgatgcggcggac
gaggatgccgctgaggtcgccgtcgaagccgtcgacgtcgccgaagctgccgtcgagatc
gcccgcgaggcggcagaggcaggcgacgcgcagcccgacgaagacgagcccgagtcccgg
ctgctgttggagacggttccggccgccccaacgacctccgccgagcccgccgactacttg
ccgctcttcgtggcgccgcagcccgtgacgttccggccgcccgccgagcccgacgacttc
gccgacgacgacaacgacgacatcaccgacgacgtggccgacagcgccgacgacggtggc
gaggatggcagcgacgacgacagcgagcggcccgccaaccggcgccgccgtcgtggtcgc
cgtggtcgtggccgcggtcggggcgaacagagcagcgacgacgcgacggacgccgacgcc
gagggcgaggcgcaggacgcctcggccgagggtgacgaggacgccgacgccgagggtgac
gaggactccggtgacgacgacgcgaacgcgtccgacggtgccagccgccgtcgtcgccgc
cgtcgccggcgcaagtccggtggtgccggtggtgacgacgccgacggtgaggccgcctcg
gccgacgatccgcccaacaccgtcgtccacgagcgcgccccgcgggcgaagtcggacaac
aacgaaatccagggcatcaccggatccacccggctggaggccaagcgtcagcgccgccgc
gacggtcgtgacgcgggccgccgccgtccgccgatcctgagcgaggccgagttcctggcc
cgccgcgaggccgtcgaacgcgtgatggtggtgcgagacaaggtccgcaccgagccgccg
cacgaaggcgcccggtacacccagatcgccgtgctggaagacggcgtcgtggtcgagcac
ttcgtcacttcagcggcttctgcctctctggtcggcaacatctacctcggcatcgtgcag
aacgtgctgccctcgatggaggcggcgttcgtcgacatcggccggggccgcaatggtgtg
ctctacgccggtgaggtcaattgggaggccgccggcctcggtggcaataaccgcaagatc
gagcaggcgctcaagcccggcgactacgtcgtcgtccaggtcagcaaggacccggtcggg
cacaagggcgcccgcctcaccacacagatttcgctggccggtcggtacttggtgtacgtg
ccgggagcgtcgtcgaccgggatcagccgcaagctgcccgacaccgagcggcagcgcctc
aaggaaatcctcaaagaggtcgtgcctgccgatgccggcgtgatcatccgcaccgcgtcc
gagggcgtcaaggaagaggacatccgcgcggacgtcaaccggttgcaggaacgctggacc
gaggtcgagaccaccgccgcggagaccaaggcgaaggcggccggcgccgcggtggcgctc
tacgaagagcctgacgtcctggtcaaggtgatccgcgacctgttcaacgaggacttctcc
aagctcgtggtgtcgggcgacgaggcctggaacaccatcagcaattacgtcaattccgtt
gcgccggaattgctttcgcgcatgtcgcagtacgaaaagtcaggcggcgcccagtccgat
gtcgccggcaacccggctccggccgggcctgacgtgttctcggtgtaccgcatcgacgag
cagctggccaaggcgatggatcgcaaggtgtggctgccctcgggcggcacgctggtgatc
gaccgcaccgaggccatgacggtggtcgacgtcaacaccggcaagttcaccggttcgggc
ggaaacctggagcagacggtcacccgcaacaacctcgaggcggccgaggagatcgtccgc
cagctgcggttgcgtgacatcggcggcatcatcgtcatcgacttcatcgacatggtgctc
gaatccaaccgcgacctggtattgcgccgcctgaccgaggcgctggcccgggaccggact
cgccaccaggtgtcggaggtcacgtcgctgggtctggtgcagctgacgcgcaagcgcctc
ggcaccggcttgatcgaggcgttctccaccacctgcacgcactgtgcgggccgcggcatc
atgctgcacggcgatccggtagacaccgcgtcggcgaacggccgcaagaccgaagccgcg
ggcggtagcgcgggtggagggggccggcgcagcaagcgcgccaagaaggtggcgccgcct
gtcgaggaggctccggtggcgaaggtgccgccgcatccgcagggcgagcacccgatgttc
aaggcgatggcggcagcgaacggcaagcatgaggacgaactcgatgatgaagacctcacc
gaggacatcgccgaggaagtaaccgacggcgatgtcgtcgagtccgccgaagcgctgatc
gagctggaccaggccgacgacctggacgccgacgaggctgacgaggacgaggacgacgcc
gaagacgacgaactcgaagtcgaactcgatgaggacttcgaggacagcgacgacgacagt
gacgagctggacctcgacgaggacgaggacgactcggacgaagactccgatgacgacgac
tccgatgacgacgactccgatgaagaagactccgatgacgacgaggacgaggacgaggac
gacgaggaagaggctgatcagcctgctgaaccggccgtcagcgccgctcccgtcgtccgg
cagcggcgtcgcgcggcggcccgccccgccggtccgccggtcggaggtgttgatggctga
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