Microbacterium aurugineum: KV397_08595
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Entry
KV397_08595 CDS
T10179
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
maug Microbacterium aurugineum
Pathway
maug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KV397_08595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maug03019
]
KV397_08595
03009 Ribosome biogenesis [BR:
maug03009
]
KV397_08595
Enzymes [BR:
maug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KV397_08595
Messenger RNA biogenesis [BR:
maug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KV397_08595
Ribosome biogenesis [BR:
maug03009
]
Prokaryotic type
rRNA helicases
KV397_08595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UPL19529
LinkDB
All DBs
Position
1765504..1767309
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AA seq
601 aa
AA seq
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MLTDAPEDSPATPGFEELGITGPVLKAIKDLGYETPSPIQAATIPTLLAGRDVVGMAQTG
TGKTAAFALPVLERLDVSQKTPQALVLAPTRELALQVCEAFESYASKMKGVHVLPVYGGQ
GYGVQLSALRRGVHVIVGTPGRIMDHLAKGTLDLSQLQYLVLDEADEMLKMGFAEDVEQI
LAQTPEEKQVALFSATMPPQIRRLAQKYLREPEEISIKSKTATGTNITQRYLVVSYAQKV
DALTRILEVENFDGMIVFVRTKNETETLAEKLRARGYSAAAINGDVPQVQRERSVNQLKD
GKLDILVATDVAARGLDVERISHVVNFDIPTDTESYVHRIGRTGRAGRSGDAISFITPRE
RYLLKHIEKATRQQPTQMQLPSTEDVNTTRLNRFDDAITTALSETGRIEAFRDIVAHYVR
HHDVPEGDVAAALAVVAQGDKPLLLDPANDPLSKAVEADNRPPRERSARDSREPRTERRS
RGDYAAYRIEVGRRHRVEPRQIVGALANEGGLGRDDFGAINIRPDFSIVELPSNLDPAVL
EKLRDTRISGRLIEIKPDRGPGGARRTAPRDGGKFERRDRDDRPARDNRDEKPYRKPRHK
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
gtgctgaccgacgcccccgaggactcccccgcgacccccggattcgaggagctcggcatc
accgggcccgtcctcaaagccatcaaggatctcggctatgagaccccgtcgcccatccag
gcggccaccattcccacgctcctggccggacgcgatgtcgtcgggatggcgcagaccgga
accggaaagaccgcggccttcgcgcttcccgtcctcgagcgcctcgacgtctcgcagaag
accccgcaagcactcgtgctcgcgcccacccgcgaactcgcgctccaggtctgcgaggcc
ttcgagtcctacgcctccaagatgaagggcgtccacgtcctccccgtctacggcggacag
ggctacggtgttcagctgtcggcgctgcgtcgcggcgtccacgtcatcgtcggcacgccc
ggccgcatcatggaccacctcgcgaagggcactctcgacctgtcccagctccagtacctc
gtgctcgacgaagccgacgagatgctgaagatgggcttcgccgaagacgtggagcagatc
ctcgcgcagactcccgaagagaagcaggtcgccctgttctcggcgacgatgcccccgcag
atccgccgcctcgcgcagaagtatctgcgtgagccggaagagatcagcatcaagtccaag
accgccaccggcaccaacatcacccagcgttacctcgtggtgtcttatgcgcagaaggtc
gacgctctcacccggatcctcgaagtcgagaacttcgacgggatgatcgtcttcgtccgc
accaagaacgagaccgagacgctcgccgagaagctccgcgcccgcggctactccgcggca
gcgatcaacggcgatgtcccccaggtgcagcgtgagcgcagcgtgaaccagctcaaggac
ggcaagctcgacatcctcgtcgccaccgacgtggctgcgcgcgggctcgacgtcgagcgc
atcagccacgtcgtgaacttcgacatccccaccgacaccgagtcgtacgtgcaccgcatc
ggtcgcacgggtcgggcgggacgctcaggcgacgccatcagcttcatcacaccgcgtgag
cgctacctgctcaagcacatcgagaaggcgacccgtcagcagccgacccagatgcagctg
ccgagcacggaggacgtgaacaccacgcgtctgaaccgcttcgacgacgcgatcaccacc
gcgctctcggagaccggacggatcgaggcgttccgcgacatcgtcgcccactacgtccgc
caccacgatgtgccggagggagacgtggccgccgccctggccgtcgtcgctcagggcgac
aagccactgctcctggaccccgcgaacgatcctctctcgaaggcggtcgaggccgacaac
cgtccgcctcgggagcgcagcgcccgcgactcgcgtgagccgcgcaccgaacgccgtagc
cgcggcgactatgcggcgtaccgcatcgaggtcggacgccgtcaccgtgtcgaaccccgc
cagatcgtcggcgccctcgcgaacgaaggcgggctgggtcgagatgatttcggagccatc
aacatccgccccgatttctcgatcgtcgagctgccttccaatctcgaccccgccgtcctg
gagaagctccgcgacacgcgtatctccggtcgcctgatcgagatcaagcccgatcgtggc
cccgggggcgctcggcgcactgctccgcgcgacggtggcaagttcgaacgacgcgaccgc
gacgaccgtccggcacgcgacaaccgcgacgagaagccgtaccgcaagccccgtcacaag
agctga
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