Microbacterium aurugineum: KV397_11300
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Entry
KV397_11300 CDS
T10179
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
maug Microbacterium aurugineum
Pathway
maug03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KV397_11300 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maug03400
]
KV397_11300 (mfd)
Enzymes [BR:
maug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KV397_11300 (mfd)
DNA repair and recombination proteins [BR:
maug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KV397_11300 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
DUF3638
DUF6307
Motif
Other DBs
NCBI-ProteinID:
UPL18298
LinkDB
All DBs
Position
complement(2335741..2339316)
Genome browser
AA seq
1191 aa
AA seq
DB search
MTVPGILRALEEASLYRDALSWARTDADLGLVDGLDAPTLAGLLARRTAAGHPAALLAVV
PTGRRAESLALAMHAYMPDADILTFPAWETLPHERLSPSPDTVGQRLQTLRRIAEWSGDH
PLIVVASVRAALQPIAGNLGEIAPLELLVGSRGHELDRVVEQLVERAYSRVDMVSRRGEF
AVRGGILDVFPPTSEHPYRVEFFGDEIDQIRAFSVADQRSLPGDVPSVDLPPTRELLLTA
DVRERARALIGGFPAISGMLEKMAEGIPVEGMESLLPAVAGPLKSLAEYLPAGSATAVID
PERASARAITLGDTNREFLDAAWSAATSGASAPIDLGAGDFLTIAELREVVRDRGGVWWR
LSPFGAGLGEGEVEATNLGAAVIPSFHGNVDGAISFVEAKVTDGWRVVVIAAGHGLVDRA
RDVLADRGLAARVLETLDEAPEPGVATLVTGSVEAGFQIEEAKLAVLTDNEFYGRTIGGD
QRVVKKLASRRKNVVDPLQLKQGDFVVHATHGIGRFVEMTQREVSTGGRNAAKSVRDYLV
LEYAPSKRGYPGDKLFVPTDQLDLLSKYVGGEAPTLSKMGGSDWSQAKGKARKAVRDIAV
ELVKLYSARMSAKGHAFGPDTPWQRELEEAFPFAETQDQLQTIDEIKADMERPIPMDRLL
SGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHLETFTERFAGFPVKVRPLSRF
QTDKEARLTLQGLLEGSVDMVIGTHRILTDQVMFKDLGLMIIDEEQRFGVEHKDALKKMK
TNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILSFVGPRSDKQMAAAIRREI
LREGQIFFVHNRVQSIQRVASELAELVPEARIAVAHGQMGEHQLEQVVDDFWERKFDVLV
STTIIETGLDIANANTIIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDETKPLSETA
ADRLQTIAVNNDLGSGMQVALKDLELRGAGNLLGAEQAGHIAGVGFDLYLRMIGEAVATF
RGDEVETGQELRLELPLDARIPEYYIDSERLRLEAYQKLSAASAATAKDEAIDLVIEELV
DRYGTPPEEVEGLVAVSRLRRRAARAGLTDVVVMGSNLRIAPARLEDSIKVRLQRLYPKA
KLVAGGEALVVPMPMVPAAVGVGLEPLPDAQLLEWVGQLFTAIFPEPVAAE
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
gtgactgttccggggattctgcgcgccttggaagaggcgtctctgtaccgtgacgccctc
agctgggcgcgcaccgacgccgacctcggcctggtcgacgggctcgacgcgccgactctg
gccggtttgctggctcgacggaccgcggcgggacatccggccgctcttctcgcggtcgtg
cccaccggtcgccgggcggagagtctggcgctggcgatgcacgcctacatgcccgatgcc
gacatcctcaccttccccgcgtgggagacgctgccgcacgagcgcctcagcccgagcccc
gacaccgtcggtcagcggctgcagacgctgcgtcggatcgcggagtggtcgggcgaccac
ccgttgatcgtggtcgcgtccgtccgcgccgcgctgcagccgatcgcagggaacctcggc
gagatcgcgccgctcgagctcctggtcggcagtcggggccacgaactcgaccgcgtggtg
gagcagctcgtcgagcgggcgtactcgcgcgtcgacatggtgtcgcggcgcggagagttc
gcggtgcgcgggggcatcctcgacgtgttcccgcccacgtccgagcatccctaccgcgtg
gagttcttcggcgacgagatcgatcagatccgggccttctcggtggccgaccagcgttcg
cttccgggcgatgtcccgagcgtcgaccttcctccgacccgtgaactgctgctcacagcc
gacgtccgcgaacgcgcccgcgcgctgatcggcggtttccccgcgatctccggcatgctc
gagaagatggccgaggggatcccggtcgaggggatggagtcgctgctccccgccgtcgcc
ggacccttgaagtcgttggccgagtacctgccggccgggagcgcgacggcggtcatcgat
cccgagcgcgcgagcgcacgtgccatcaccctgggcgacacgaaccgcgagttcctcgac
gccgcctggagcgcggccacctccggcgcttccgcgcccatcgatctgggggccggggat
ttcctgacgatcgccgagctccgggaggtcgtgcgcgaccgcggcggcgtgtggtggcgg
ctcagcccgttcggcgccggcctcggcgagggcgaggtggaggcgaccaacctcggcgcc
gccgtcatcccctccttccacggcaacgtcgacggggccatctccttcgtcgaggcgaag
gtgaccgacggatggcgcgtggtcgtgatcgccgccggtcacggactggtcgatcgtgca
cgcgacgtcctcgcagaccggggcctggccgcccgcgtgctcgagacgctcgacgaggcg
ccggagcccggtgtcgcgacactcgtcacaggttcggtcgaagcgggcttccagatcgag
gaggcgaagctcgcggtcctcaccgacaacgagttctacggccgcacgatcggcggcgac
cagcgcgtcgtcaagaagctcgcctcccgccgcaagaacgtcgtcgatccgctccagctc
aagcagggcgacttcgtcgtgcacgccacgcacggcatcggccggttcgtcgagatgacg
cagcgggaggtgtcgaccgggggacgcaatgccgccaagtcggtccgcgactacctcgtg
ctcgagtacgcaccgtccaaacgcggctacccgggcgacaagctcttcgtgccgaccgac
cagctcgacctgctctcgaagtacgtcggcggcgaagcgcccacgctctcgaagatgggc
ggaagcgactggtcgcaggccaagggcaaggcgcgcaaggcggtccgcgacatcgccgtc
gagctcgtgaagctctactccgcgcgcatgagcgccaagggacacgccttcggtccggac
acgccgtggcagcgcgagctggaggaggcgttcccgttcgccgagacccaggaccagctg
cagaccatcgacgagatcaaggccgacatggagcggccgatcccgatggaccggctgctc
tcgggggacgtcggattcggcaagaccgaggtcgccgtccgtgccgccttcaaggcgatc
caggacggcaagcaggtcgcgatgctcgtgcccaccacccttctcgtgaagcagcacctc
gagaccttcaccgagcgcttcgccggattcccggtcaaggtgcggccgttgtcgcgcttc
cagaccgacaaggaagcccggctcaccctccaggggctgttggagggctcggtcgacatg
gtgatcggcacccaccgcatcctcaccgatcaggtgatgttcaaggatctcggcctcatg
atcatcgacgaggagcagcggttcggggtcgagcacaaggacgcgctcaagaagatgaag
accaacgtcgacatcctcgccatgagtgccactcccatcccgcgcacgctcgagatggcg
gtcacgggcatccgggagatgtcgacgctggcgactccgcccgaggaccgtcatccgatc
ctctcgttcgtcggtccccgcagcgacaagcagatggccgccgcgatccgacgtgagatc
ctgcgcgaggggcagatcttcttcgtgcacaaccgcgtgcagtccatccagcgcgtggcg
agcgagctcgccgaactcgtgccggaggcccgcatcgccgtcgcccacggacagatgggc
gagcaccagctcgaacaggtcgtcgacgacttctgggagcgcaagttcgacgtcctcgtc
tcgacgaccatcatcgagaccggcctcgacatcgccaacgcgaacacgatcatcatcgac
cgcgccgacaagtacgggctcagccagctgcaccagcttcgaggtcgtgtcggacgaggg
cgcgagcgcgcgtacgcgtacttcctctacgacgagaccaagccgctctccgagaccgcg
gcagaccgtctgcagacgatcgcggtcaacaacgacctcggctccggcatgcaggtcgcg
ctgaaagacctcgaactgcgtggggcgggcaacctcctcggtgccgagcaggccggacac
atcgccggcgtcggattcgacctgtacctgcgcatgatcggcgaggccgtggcgaccttc
cgcggcgacgaggtcgagaccggacaggagctgcgactggagttgccgctcgatgcgcgc
atccccgagtactacatcgacagcgagcgtctgcgactcgaggcctatcagaagctctcg
gcggcctcggcggcgacggcgaaggacgaggccatcgacctcgtgatcgaggagctcgtc
gaccgctacggcacaccgccggaagaggtggagggcctggtcgcggtctcgcgtctgcgg
cgccgtgccgcccgcgccgggctcacggatgtggtcgtgatggggtcgaacctgcgcatc
gcgcccgcacgcctcgaagactcgatcaaggtgcggttgcagcgactgtatccgaaggcg
aagctcgtggccgggggagaggcgctggtcgtgccgatgcccatggttcccgcagcggtc
ggcgtcggtctcgagccgctgcccgatgcacagctgctcgagtgggtcggacagctgttc
accgcgatcttccccgagccggtcgcggccgagtag
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