Microbacterium aurum: BOH66_11805
Help
Entry
BOH66_11805 CDS
T04977
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
maur
Microbacterium aurum
Pathway
maur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BOH66_11805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maur03019
]
BOH66_11805
Messenger RNA biogenesis [BR:
maur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BOH66_11805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
DUF1732
Motif
Other DBs
NCBI-ProteinID:
APZ34854
UniProt:
A0A1P8U9P8
LinkDB
All DBs
Position
complement(2400754..2402430)
Genome browser
AA seq
558 aa
AA seq
DB search
MPTNVYDPPALENGTLRVIPLGGLGEIGRNMTVFEFDGKLLIVDCGVLFPEEHQPGVDLI
LPDFEPIKGRLDDVVGLVLTHGHEDHIGAVPYLLKLKSDIPLIGSQLTLALVEAKLEEHR
IKAYTLTVAEGQEEQVGPFDLEFVAVNHSIPDALAVAIHTDAGTVLATGDFKMDQLPLDG
RLTDLRAFASLGEDGVDLFLVDSTNADVPGFTPLERAIGPVLDQVIAKAPRRVIVASFSS
HVHRVQQVIDAAAENGRRVAFLGRSMVRNMTIAEELGYLHVPDGVLIDYKKAKDLPDDRI
VYMSTGSQGEPMAVLSRMANLDHAIEPGPGDTVILASSLIPGNENAVYRVIDGLTKLGAN
VVHKGNAKVHVSGHAAAGELLYCYNILQPRNVMPVHGEYRHLIANAKLAQDTGIPAENTI
IAENGTVVDLQGGVAKVVGQLDLGFVYVDGSTVGEITDADLKDRRILSEEGFISVIVVVD
AATGRIITGPEIHARGFAEDDSVFDDVEPKIAAALTEAAQSGVRDTHALSQVVRRTIGRW
VNQRLRRRPMIVPLVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgaacgtgtacgacccgcccgccctcgagaacggcaccctccgggtgatcccc
ctcggcggcctgggtgagatcggccgcaacatgaccgtcttcgagttcgacggcaagctc
ctgatcgtcgactgcggcgtgctcttccccgaggagcaccagccgggcgtcgacctcatc
ctccccgacttcgaaccgatcaaggggcgcctcgacgacgtcgtgggcctcgtgctgacg
cacggccacgaagaccacatcggcgccgtgccgtacctcctcaagctcaagagcgacatc
ccgctcatcggctcgcagctgacgctcgcgctcgtcgaggcgaagctcgaggagcaccgc
atcaaggcgtacacgctcaccgtcgcggagggccaggaggagcaggtcggccccttcgac
ctcgagttcgtcgcggtgaaccactcgatcccggatgccctcgccgtcgcgatccacacg
gatgccggcacggtgctcgccacgggcgacttcaagatggaccagctgccgctcgacggc
cggctgaccgatctgcgcgccttcgcgagcctgggcgaggacggcgtcgacctcttcctc
gtcgactcgacgaacgcggacgtccccgggttcacgccgctcgagcgggcgatcggtccc
gttctggatcaggtgatcgcgaaggcgccgcggcgcgtgatcgtcgcgagcttctcgagc
cacgtgcaccgcgtgcagcaggtcatcgacgccgccgccgagaacgggcgccgcgtcgcg
ttcctcggccgctcgatggtgcgcaacatgacgatcgccgaggagctcgggtacctgcac
gtgccggacggcgttctcatcgactacaagaaggccaaggacctcccggacgaccggatc
gtctacatgtccaccgggtcgcagggtgagccgatggccgtgctgtcgcgcatggcgaac
ctcgatcacgcgatcgagcccggtcccggcgacaccgtgatcctggcatccagcctcatc
ccgggcaacgagaacgccgtctaccgcgtgatcgacggactgacgaagctcggcgcgaac
gtcgtgcacaagggcaacgcgaaggtgcacgtctccggccacgccgccgccggcgagctg
ctgtactgctacaacatcctgcagccgcgcaacgtcatgcccgtccacggcgagtaccgg
cacctcatcgcgaacgcgaagctcgctcaggacacgggcatccccgccgagaacacgatc
atcgccgagaacggcaccgtcgtcgacctgcagggcggggtggcgaaggtcgtcggccag
ctcgacctgggcttcgtgtacgtcgacggctccaccgtcggggagatcaccgacgccgac
ctcaaggaccgccgcatcctgagtgaagagggcttcatctcggtgatcgtggtggtggat
gccgcgaccggccgcatcatcacgggacccgagatccacgcccgcggtttcgcggaggac
gacagcgtcttcgacgacgtcgagccgaagatcgccgccgcgctcaccgaagcggcacag
tctggcgtgcgcgacacgcatgcgctgtcgcaggtggtgcgccgcacgatcggccgctgg
gtcaaccagcgcctgcgccgccgcccgatgatcgtccccctcgtcatcgaggcgtag
DBGET
integrated database retrieval system
