Mycolicibacterium austroafricanum: JN090_21235
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Entry
JN090_21235 CDS
T10323
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
maus Mycolicibacterium austroafricanum
Pathway
maus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JN090_21235 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maus03021
]
JN090_21235 (rho)
03019 Messenger RNA biogenesis [BR:
maus03019
]
JN090_21235 (rho)
Transcription machinery [BR:
maus03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JN090_21235 (rho)
Messenger RNA biogenesis [BR:
maus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JN090_21235 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
Fungal_virus_P2_C
VWA_2
AAA_22
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QRZ05450
LinkDB
All DBs
Position
complement(4504447..4506426)
Genome browser
AA seq
659 aa
AA seq
DB search
MTDTDLFTAGSADSGELPNTVTATNSASSEQAGAPAAAPAADEAPAATRARRGALTSLVL
PELRAMAKEIGVEGASGMRKSELIAAIRERRGEANGKPAAKSDIAEATAAAPAGDTAADS
TAPEQAAEAQPQQRRRERRGSSREQGGPNAGEQAGDQDKTEAGRPESGQAEGRGKNAPQE
QQGGGRETREHKDNQGGQTSKAEGRADSDTRSDGGDQQGGQNRGRGGEGGGNRAADNDDD
GDGRQGRRGRRFRDRRRRERGGEGGGGGDRDTELREDDVVQPVAGILDVLDNYAFVRTSG
YLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRVPKDGEQSNQRQKFNPLVRLDSVNGGPVE
EARKRPEFQKLTPLYPNTRLRLETSSDKLTTRVIDLIMPIGKGQRALIVSPPKAGKTTIM
QDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTQAAELAIE
RAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIE
EGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKD
ELLLSPDEFAVVHKLRRVLSGLDPHQAIDLLMSQLRKTKNNYEFLVQVSKNTPGGVDND
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatacggacctcttcacggctggcagcgccgacagcggcgagctgccgaacacc
gtgactgcaacaaacagcgcctcatccgagcaggcaggtgcgcccgctgcggcgcccgcc
gcggacgaggccccggcggcgacccgcgcccgccgtggtgctctgaccagcctcgtgctg
cccgagctgcgggccatggccaaagagatcggcgtcgaaggcgcctccggcatgcgcaag
agcgagctgatcgccgccatccgcgagcgtcgcggcgaagccaacggcaagcccgcggcc
aagagcgacatcgcggaggccactgccgccgccccggccggcgataccgcggccgacagc
acggcccccgagcaggccgccgaagcgcagccgcagcagcggcgtcgtgagcgccgcgga
tcctcgcgtgagcagggtggccccaacgccggcgaacaggccggcgaccaggacaagacc
gaagccggacggcccgagtcgggtcaggccgaagggcgcggcaagaacgccccgcaggag
cagcagggcggcggccgcgagacccgcgagcacaaagacaaccagggcggccagacctcc
aaggccgagggcagggccgactcggatacccgctccgacggcggtgaccagcagggcggg
cagaaccgcggccgcggcggcgaaggtggcggcaatcgcgctgccgacaacgacgacgac
ggagacgggcgtcagggccggcggggtcggcgattccgcgaccgcaggcgccgtgagcgc
ggcggcgagggtggtggcggcggtgaccgcgacaccgaactccgcgaggacgacgtcgtg
caacccgtcgcgggcatcctcgatgtcctcgacaactatgcgttcgtccggacctcgggc
tatctcgccgggccgaacgacgtctacgtctcgatgaacatggtccgcaagaacggactg
cgtcgcggcgacgcggtgaccggtgcggtccgcgttcccaaagacggagagcagtccaat
cagcggcagaagttcaacccgctggtgcgcctcgactccgtcaacggcgggcctgtcgaa
gaggccaggaagcggcctgagttccagaagctcacaccgctctacccgaacacccgcctg
cgcctggagaccagttcggacaagctcaccacccgcgtgatcgatctgatcatgccgatc
ggcaaggggcagcgtgcgctgatcgtgtcgccgcccaaggccggcaagacgacgatcatg
caggacatcgcgaacgcgatcacccgcaacaacccggaatgccatctgatggtcgtgctc
gtcgacgagcgcccggaagaggtcaccgacatgcagcgctcggtcaagggcgaggtcatc
gcgtcgaccttcgaccggccgccgtcagatcacacgcaggccgccgagctcgccatcgaa
cgggccaagcgcctggtcgagcagggcaaggacgtcgtggtgctgctcgactcgatcacc
cgtctggggcgtgcgtacaacaatgcgtcgccggcgtcgggccgcatcctgtccggtggt
gtggattcgacggcgctgtacccgccgaagcgattcctcggcgcggcacgcaacatcgaa
gagggcggctcgctgacgatcatcgccacggccatggtcgagaccggctccaccggtgac
acggtgatcttcgaggagttcaagggcaccggcaacgccgagctcaaactcgaccgcaag
atcgccgagcgccgcgtgttcccggcggtcgacgtcaatccgtccggcacccgcaaggac
gagctgctgctctcgcccgacgagttcgcggtcgtgcacaagctgcgccgagtgctgtcc
ggcctcgacccgcatcaggcgatcgacctgctgatgagtcagctgcgcaagaccaagaac
aactacgagttcctggttcaggtctccaagaacacgcccggcggcgtcgacaacgactga
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