Mycobacterium avium 104: MAV_4502
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Entry
MAV_4502 CDS
T00433
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mav
Mycobacterium avium 104
Pathway
mav03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MAV_4502 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mav03021
]
MAV_4502 (rpoC)
03400 DNA repair and recombination proteins [BR:
mav03400
]
MAV_4502 (rpoC)
Enzymes [BR:
mav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MAV_4502 (rpoC)
Transcription machinery [BR:
mav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MAV_4502 (rpoC)
DNA repair and recombination proteins [BR:
mav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MAV_4502 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ABK69395
UniProt:
A0QL48
LinkDB
All DBs
Position
complement(4627384..4631334)
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD
LAELEAEGAKADARRKVRDSGEREMRQIRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL
YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAEQLRDVIRNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGEYR
PAAKDTPEVGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD
AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQASIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE
LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVARGEDLGDPEIDALLAAGITSV
KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYDKL
SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccggatcggtctggccaccgcggaggacatc
aggcaatggtcgtacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgcgagcgcatgggccacatcgagttggccgcgccc
gtcacgcacatctggtacttcaagggcgtgccgtcgcgattgggctacctgctcgacctg
gcgcccaaggacctcgagaagatcatctacttcgccgcgtacgtgatcacgtccgtcgac
gaggagatgcggcacaacgagctctccaccctcgaggccgagatgatggtggagcgcaag
gccgtcgaggaccagcgcgacgccgacctggaggcgcgcgcccagaagctggaggccgac
ctggccgagctggaggccgagggcgccaaggccgacgcgcggcgcaaggtccgcgacagc
ggcgagcgggagatgcgccagatccgcgaccgcgcccagcgcgagctggaccggctggag
gacatctggaacaccttcaccaagctggcccccaagcagctgatcgtcgacgagaacctc
taccgcgagctggtcgaccgttacggcgagtacttcaccggcgccatgggcgcggagtcg
atccagaagctcatcgagaacttcgacatcgacgccgaggccgagcagctgcgtgacgtc
atccgaaacggcaaggggcagaagaagcttcgcgccctcaagcggctcaaggtggtcgcc
gcgttccaacagagcggcaactcgccgatgggcatggtgctcgacgccgtcccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccggttcgccaccagcgacctc
aacgacctgtaccgccgggtgatcaaccgcaacaaccggctcaagaggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcg
ctgttcgacaacggccgccgcggccgcccggtcaccgggccgggcaaccgcccgctgaag
tcgttgagcgacctgctcaagggcaagcagggccggttccggcagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggcctgcccaagctgatggcgctcgagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcggatggtggagcgccagcgt
ccgcaggtgtgggacgtgctggaagaggtcatcgccgagcacccggtgctgctgaaccgc
gcgcccacgctgcaccggttgggcatccaggccttcgagccgatgctggtggagggcaag
gcaattcagctgcacccgttggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgttgagcgccgaggcgcaggccgaggcccgcatcctgatgctg
tcgtccaacaacatcctgtcgcccgcgtcgggccgcccgctggccatgccgcgactggac
atggtgaccgggctgtactacctgaccaccgaggtcgaaggcgacaagggcgagtaccgg
cccgcggccaaggacacccccgaggtgggcgtgtactcctcgccggccgaggccatcatg
gccgccgaccgcggggtgctctcggtgcgggccaagatcaaggtgcggctgacccagttg
cgtccgcctgccgagatcgaggccgagctgttcggtgccaacggctggcagccgggcgac
gcctggatggccgagaccacgctgggccgggtgctgttcaacgagctgctgccggtgggc
tacccgttcgtgaacaagcagatgcacaagaaggtgcaggcgtcgatcatcaacgacctg
gccgagcgctacccgatgatcgtcgtcgcgcagaccgtggacaagctcaaggacgccggc
ttctactgggcgacccgcagcggtgtcaccgtgtcgatggccgacgtcttggttccgccg
cgcaagaaggagatcctcgaccagtacgaggagcgggccgagaaggtcgaaaagcagttc
cagcgtggtgctttgaaccacgacgagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgacgaggtcggtcaggcgctgcgcgagcactacccggccgacaacccgatcatc
acgatcgtcgactcgggcgccaccggtaacttcacccagacccggacgctggccggcatg
aagggtctggtgaccaacccgaagggtgagttcatcccgcgtccggtcaagtcgtcgttc
cgcgagggcctgaccgtgctggagtacttcatcaacacgcacggcgctcgaaagggcttg
gcggacaccgcgttgcgtaccgccgactcgggttatctgacccgtcgtctggtggacgtc
agccaagacgtcatcgtgcgcgagcacgactgcgagaccgagcggggcatcgtcgtcgaa
ctggccgagcgtcagcccgacggcaccctgatccgtgacccgtacatcgaaacctcggcg
tacgcacggactttgggcaccgacgcggtcgacgaggccggcaacgtcatcgtcgcccgc
ggcgaggacctcggtgacccggagatcgacgccctgctggcggccggcatcacgtcggtc
aaggtgcgctcggtgctgacctgcaccacgggcaccggcgtgtgcgcgacctgctacggc
cggtcgatggccaccgggaagctggtcgacatcggcgaggccgtcggcatcgtcgccgcc
cagtccatcggtgagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtc
ggtgaggacatcacgggcggtctgccccgggtgcaggagctgttcgaggcccgcatcccg
cgcggtaaggcgccgatcgccgacgtcaccggccgggtgcggctcgaggacggtgagcgg
ttctacaagatcaccatcgttcccgacgacggcagcgaggaggtcgtctacgacaagctg
tccaagcggcagcggctgcgcgtgttcaagcacgaggacggctccgagcgggtgctctcc
gacggcgaccacgtcgaggtgggccagcagctgatggaaggctcggccgacccgcatgag
gtgctgcgtgtgcagggcccgcgcgaggtgcagatccacttggtccgcgaggtccaggag
gtctaccgcgcgcagggtgtgtcgatccacgacaagcacatcgaggtgatcgttcgccag
atgctgcgccgcgtcaccatcatcgactcgggctcgacggagttcctgcccggctcgctg
atcgaccgcgcggagttcgaggcggagaaccgccgggtggtggccgagggcggcgagccc
gccgccgggcgtccggtgctgatgggtatcacgaaggcgagcctcgccaccgactcgtgg
ctgagcgcggcgtcgttccaggagaccacgcgagtgctgaccgacgcggcgatcaactgc
cgcagcgacaagctcaacggtctgaaggagaacgtgatcatcgggaagctgatcccggcc
ggtaccgggatcaaccggtaccgcaacatccaggtgcagccgaccgaggaggcccgggcc
gccgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccaggcc
accggcgccgcggtgccgctggacgactacggctacagcgactaccgctag
DBGET
integrated database retrieval system
