| Entry |
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| Symbol |
rpoB
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| Name |
(GenBank) DNA-directed RNA polymerase, beta subunit
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| KO |
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| Organism |
mav Mycobacterium avium 104
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:mav00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MAV_4503 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:mav03021]
MAV_4503 (rpoB)
03400 DNA repair and recombination proteins [BR:mav03400]
MAV_4503 (rpoB)
Enzymes [BR:mav01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MAV_4503 (rpoB)
Transcription machinery [BR:mav03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MAV_4503 (rpoB)
DNA repair and recombination proteins [BR:mav03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MAV_4503 (rpoB)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(4631379..4634813)
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| AA seq |
1144 aa
MPGAPNRVSFAKLREPLEVPGLLDVQIDSFEWLIGAPRWREAAIARGDAEPKGGLEEVLD
ELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQT
VFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAW
LEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQITERFGFSEIMMSTLEKDNTAGTD
EALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGEPITSS
TLTEEDVVATIEYLVRLHEGQPTMTVPGGIEVPVETDDIDHFGNRRLRTVGELIQNQIRV
GMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTH
KRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGF
IETPYRKVVDGVVTDEIHYLTADEEDRHVVAQANSPIDDKGRFAEARVLVRRKAGEVEYV
PSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME
LRAAIDAGDVVVAEKSGVIEEVSADYITVMADDGTRHTYRMRKFERSNHGTCANQSPIVD
AGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIH
IEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGE
TELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVNELVRV
YVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPFLPDGTPVDIILNTHGVPRRMNIGQI
LETHLGWVAKSGWNIDGNPEWAVNLPEELRHAQPNQIVSTPVFDGAKEEELAGMLSCTLP
NRDGEVMVDGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQ
QPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPE
PGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLSRNESASV
EDLA |
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| NT seq |
3435 nt +upstreamnt +downstreamnt
gtgcccggagcgcccaaccgagtttccttcgccaagctgcgcgaaccgctcgaggttccc
ggcctgctggacgtgcagatcgactccttcgagtggctgatcggcgcgccacggtggcgt
gaggccgcgatcgcccgcggcgacgcggagcccaagggcgggctggaagaggtgctcgac
gagctgtcgccgatcgaggacttctcgggctcgatgtcgctgtctttctccgacccccgc
ttcgacgaggtcaaggcgccggtcgacgagtgcaaagacaaggacatgacgtacgcggcc
ccgctgttcgtcacggccgagttcatcaacaacaacaccggcgagatcaagagccagacg
gtgttcatgggcgacttcccgatgatgaccgagaagggcaccttcatcatcaacgggacc
gagcgcgtggtggtcagccagctggtccgctcgccgggcgtgtacttcgacgagaccatc
gacaagtccaccgagaagacgctgcacagcgtcaaggtgatccccagccgcggcgcctgg
ctggagttcgacgtcgacaagcgcgacaccgtcggcgtgcgcatcgaccgcaagcgccgc
cagccggtcaccgtgctgctcaaggcgctgggctggaccaacgagcagatcaccgagcgg
ttcggcttctccgagatcatgatgtcgacgctggagaaggacaacaccgccggcaccgac
gaggcgctgctggacatctaccgcaagctgcgcccgggcgagccgccgaccaaggagtcc
gcgcagaccctgctggagaacctgttcttcaaggagaagcgctacgacctggcccgggtg
ggccgctacaaggtcaacaagaagctcggcctgcacgccggtgagccgatcaccagctcg
acgctgaccgaggaagacgtcgtcgccaccatcgagtacctggtgcgcctgcacgagggt
cagcccacgatgaccgtccccggcggcatcgaggtgccggtggagaccgacgacatcgac
cacttcggcaaccgccggctgcgcaccgtcggtgagctgatccagaaccagatccgggtc
ggcatgtcccggatggagcgcgtcgtccgcgagcggatgaccacccaggacgtcgaggcc
atcacgccgcagaccctgatcaacatccgtccagtcgtggcggcgatcaaggagttcttc
ggcaccagccagctgtcccagttcatggaccagaacaacccgctgtcggggctcacccac
aagcgccgcctgtcggcgctgggcccgggtggtctgtcccgggagcgggccgggctggag
gtccgcgacgtgcacccgtcccactacggccggatgtgcccgatcgagaccccggagggt
cccaacatcggtctgatcggctcgctgtcggtgtatgcgcgggtcaacccgttcgggttc
atcgagacgccgtaccgcaaggtggtcgacggcgtggtcaccgacgagatccactacctg
accgccgacgaggaggaccgccacgtggtggcgcaggccaactcgccgatcgacgacaag
ggccggttcgcggaggcccgggtgctggtccgccgcaaggcgggcgaggtcgagtacgtg
ccctcgtccgaggtggactacatggacgtgtcgccgcgccagatggtgtcggtggccacc
gcgatgatcccgttcctcgagcacgacgacgccaaccgtgccctgatgggcgccaacatg
cagcgccaggcggttccgctggtgcgcagcgaggcgccgctggtgggcaccggcatggag
ctgcgcgccgcgatcgacgccggcgacgtcgtcgtcgccgagaagtccggggtgatcgag
gaggtctccgccgactacatcaccgttatggccgacgacggcacccggcacacctaccgg
atgcgcaagttcgagcggtccaaccacggcacctgcgccaaccagagcccgatcgtcgac
gccggcgaccgggtcgaggcgggccaggtcatcgccgacggtccgtgcaccgagaacggc
gaaatggcgctgggcaagaacctgctcgtggcgatcatgccgtgggaaggccacaactac
gaggacgcgatcatcctctccaaccggctggttgaggaggacgtgctcacctcgatccac
atcgaggagcacgagatcgacgcccgcgacaccaagctgggcgccgaggagatcacccgg
gacatcccgaacgtctccgacgaggtgctggccgacctcgacgagcgcggcatcgtgcgc
atcggcgccgaggtccgcgacggcgacatcctggtcggcaaggtcaccccgaagggggag
accgagctgacgccggaggagcggctgctgcgcgccatcttcggcgagaaggcccgcgag
gtccgcgacacctcgctgaaggtgccgcacggcgagtccggcaaggtcatcggcatccgg
gtgttctcccgcgaggacgacgacgagctgcccgccggggtcaacgagctggtccgcgtc
tacgtggcccagaagcgcaagatctccgacggtgacaagcttgccggccggcacggcaac
aagggcgtcatcggcaagatcctgccgcaggaggacatgccgttcctgccggacggcacg
ccggtggacatcatcctgaacacccacggtgtgccgcgacggatgaacatcggccagatc
ctggagacccacctggggtgggtggccaagtccggctggaacatcgacggcaatcccgag
tgggcggtcaacctgcccgaggagctgcggcacgcacagccgaaccagatcgtgtcgaca
ccggtgttcgacggcgccaaggaagaggagctggccggcatgctgtcgtgcacgctgccc
aaccgcgacggcgaggtcatggtggacggcgacggcaaggcggtgctgttcgacggccgg
tccggggagccgttcccgtacccggtgaccgtcggctacatgtacatcatgaagctgcac
cacctggtggacgacaagatccacgcccgctccaccggcccgtactcgatgatcacccag
cagccgctgggcggtaaggcgcagttcggtggccagcgcttcggtgagatggagtgctgg
gccatgcaggcctacggcgcggcgtacacgctgcaggagctgttgaccatcaagtccgac
gacacggtcggccgggtcaaggtgtacgaggcgatcgtcaagggcgagaacatcccggag
ccgggtatccccgagtccttcaaggtgttgctcaaggagctgcagtcgctgtgcctcaac
gtcgaggtgctctcctccgacggcgcggcgatcgagctgcgcgaaggcgaggacgaggac
ctggagcgggccgcggcgaacctgggaatcaacttgtcccgcaacgaatccgcgtccgtc
gaggacctggcttaa |
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