Muscardinus avellanarius (hazel dormouse): 308261913
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Entry
308261913 CDS
T11987
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
mave Muscardinus avellanarius (hazel dormouse)
Pathway
mave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
308261913 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mave03019
]
308261913 (SKIC3)
Messenger RNA biogenesis [BR:
mave03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
308261913 (SKIC3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_16
TPR_17
TPR_8
TPR_14
TPR_CcmH_CycH
TPR_11
TPR_12
CFAP70_TPR_C
ANAPC3
CFAP70_mid_TPR
ARM_TT21_C
TPR_9
TPR_15
TTC22_N
Sel1
ARM_TT21_2nd
CABIN1_N
ARM_TT21_5th
Fis1_TPR_C
TPR_30
TPR_6
TPR_Slam
BTAD
TPR_Psidin_N
VPS18_solenoid_1st
Retrotran_gag_2
TPR_20
Motif
Other DBs
NCBI-GeneID:
308261913
NCBI-ProteinID:
XP_080550239
LinkDB
All DBs
Position
1:complement(<81467207..>81548922)
Genome browser
AA seq
1564 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPNQLLAWQGLASLYEKGNHVNAKDDLPSVYQKLLDLYESVDKQKWCDVCK
KLVDLYYQEKKHLEVARTWHKLIKTRQEEGADNQELHQLWRKLTQLLAESTEDQNNETQQ
LLFTAFEKALDLSDMIPSEDHQILYRHFIQCLSKFPHETARLKKACEGMINIYPALEYPL
EMLCLHLIESGSLTDEGQQYCCKLVEMNSKSGPGLIGLGIKALQDKKYEDAIRNLTEGLK
ESPLCTAGWYHLAETQVKMHRCKEAVLSCSQALKNIDSLGVPGGSLNQKNLCLRLKAEAL
IKLSDCDSSEEAVRTLDQVSDANNIPGLLVLKSLAYLNKGSLDEATKIMEDVLSSYPDLA
EAHALEAFIHFTKKDYLQAEKCFQRALERDPEVAEYHYQLGLTYWFMGEETRKDKTKALT
HFLKAARLDTYMGKVFYYLGHYYQDVVGDKSRARGCYRKAFELDDTDAESGAAAVDLSVE
LEDMEAALSILTTVIQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFTKASELNPESMYSVFKAAAIQQILGKYKEAIAQYQQIIK
KKEDYVPALKGLGECHLMMAKAALVDYLDGKAVYYIERALEYFTWALQHRADVSCLWKLV
GDACTSLYAVSPSKVNVNVLGVLLGQKEGKQVLKKTELLHLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQHLAETGSDTNDLKELLEKSLHCLKKAVRLDSNNHLYWNALGVVASYRGI
GNYALAQHCFIKSIQAEQINAVAWTNLGVLYLANENIEQAHEAFKMAQSLDPSYLMCWIG
QALIAEAVGSYDTMDLFRHTTELSMHTEGAIGYAYWVCTTLQDKSNRETELYQYNILQMN
AIPAAQVVLSKYVERIQNYAPAFTMLGYLNEHLHLKREAADAYQRAILLLQTSEEQSAYQ
VAVRNYGRLLCSIGEYDKAIQAFKSTPLEELEDIIGFALALFMKGLYKESSKAYERALSI
VESEQDKAHILTALAITEYKQGKMDVAKSLLFKCSILKEPTTESLQALCALGLAMQDATL
SKAALNELLKHIKHKDSAYQKCLLTSAIYALQGRSVAVQRQASKAVHSNPADPSLWSLLS
RAVAQYAQRNAKGGAVAGNVAYILDSNHGKKALLYTAVNQLAVGSSSAEDEKNIALKTIQ
KAALLSPGDPAVWAGLMAACHADDKLALVNNTPPKRMDLYLALLSAVSASIKDKEFLENY
NQSLEKWSLSQAVTGLIDTGRISEAESLCTKNLKSNPDQPAVILLLRQVQCKSLLESKKP
LPDAVLEELQKTVKSNSTSVPAWQWLAQVYQSQGMMGAAEMCYRKSLQVASQQGSWSGKL
SSLLKLALLALEICMANIPNDHWPSLVQEATTEALKLCFCPLAVFLQALLQFNRKMGARE
TRRLLERVVNQPGYPKSIVSAARWYLLRHLYAKNDYELIEVLVKNAETHGDTRALELNQK
LSSQ
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaagaagtaaagactgctttaaaaagcgcaagagatgcaattagaaacaaa
gaatataaagaagctctgaagcattgcaagacagtgttaaagcaagagaaaaataactat
aatgcctgggtttttattggtgttgctgcagcagagctagaacaaccagatcaggcacag
ggtgcttataagaaagctgctgaactagagccaaaccaactactagcttggcaggggtta
gcaagcttgtatgagaagggtaatcatgtaaatgctaaggatgacttaccaagtgtttac
caaaagctcctggatctctatgaaagtgttgacaaacagaagtggtgtgatgtctgtaag
aaacttgtggatctgtattaccaggaaaagaaacacctagaggtagctcgaacatggcac
aagctgataaagacacggcaggaagaaggtgcagacaatcaagagcttcatcagctatgg
aggaaactgactcagttactggctgagagcactgaggatcagaataatgaaacccagcaa
ctgcttttcactgcatttgagaaagcactggacttatcagatatgattcctagtgaagat
caccaaattctttataggcatttcattcagtgtttatccaaatttcctcatgaaactgct
aggttgaagaaggcctgtgaaggaatgataaacatctatcccgccctagaatatccactg
gaaatgctttgtttgcatttaattgaatcaggaagtcttactgatgaaggacaacaatat
tgttgtaaactagtggaaatgaattcaaaaagtggtccaggtctcattggcttaggcatt
aaagcattacaagacaaaaaatatgaagatgctattaggaatctaacagaagggttaaag
gaaagtcctctctgcacagctggatggtatcacttggcagaaacccaagtcaaaatgcac
aggtgtaaggaagctgttctttcatgcagtcaagccctgaagaacatagacagtcttggt
gtacctggtggcagtctcaatcagaagaacctttgtctccgtttgaaagcagaggcttta
attaagctctcggattgtgactcttcagaggaagcagttcgtactcttgatcaggtttca
gatgcaaataacatcccaggacttttggttctcaaaagcttggcctatctgaacaaaggc
tcattagatgaagctacaaagattatggaagacgttctctcttcttaccctgacctagct
gaagctcacgcccttgaggctttcatccattttacgaaaaaggactatctacaagcagaa
aaatgtttccagagagcacttgagagagatcctgaagttgcagaatatcattaccagctt
gggttaacatattggttcatgggcgaagaaacaagaaaagataaaacaaaggctcttacc
cacttcctaaaggcagcaagactggatacatacatgggtaaagtgttctactatttgggt
cattattaccaagatgtagtgggagataaaagcagggcccgtggctgctacaggaaagcc
tttgaactagatgacactgatgctgaatccggagctgcagcagttgacctaagtgtggag
cttgaagatatggaagctgccttgtctattttaacaacagtaattcaaaaagcaagtgct
ggaacagcaaaatgggcctggcttaggcgaggactgtactatttgaaagctggtcaacat
tctcaagcagtggctgatttacaggcagcattaagggcagacccaaaggacttcaattgt
tgggagtctttaggagaggcatacttaagcagaggcggttataccacagccttgaagtct
ttcacaaaagccagtgagctgaacccagaatccatgtacagtgtcttcaaggctgcagca
atacagcaaatcctaggcaagtacaaggaggccatagctcaataccagcagatcattaaa
aagaaagaagactatgtgcctgctttgaaaggtttgggtgaatgccatcttatgatggca
aaagcggctctagtggattatcttgacgggaaagctgtatactacatagaaagagccctg
gagtattttacttgggccctgcagcatcgagctgatgtgtcctgcctttggaagctagtt
ggggatgcttgcaccagtctgtatgctgtttcaccatctaaagtgaatgttaatgtttta
ggagtccttctaggtcagaaagaaggaaaacaagtgttaaagaaaactgagctcctccat
cttggaggaaggtgttatggtcgtgcattaaaactgatgtctacatctaatacatggtgt
gatcttggaattaattattaccgccaagcacaacacctagcagaaacaggcagcgacacg
aatgatcttaaagagttgctagagaaatctttgcattgtctgaaaaaggcagtgagactt
gacagtaataaccacttatattggaatgctcttggtgtggtggcgagttaccgtgggatt
ggaaattatgctcttgctcagcactgtttcatcaaatccatccaagcagaacaaattaat
gccgttgcatggaccaatttgggagtattataccttgcaaatgaaaacattgagcaagct
catgaagctttcaaaatggctcaatcccttgatccttcttatttaatgtgttggattgga
caggctcttattgcagaggcagttggaagttacgacaccatggacctcttcaggcacact
acagaactcagtatgcatactgagggagcaataggctatgcatattgggtctgtacaaca
ttgcaagataaaagcaacagagaaacagagctgtaccagtacaacatcctccagatgaat
gctattccagcagctcaagttgttttgtctaaatatgtggaaagaattcagaactatgct
ccagctttcacaatgttgggttacttaaatgagcacctacatctgaaaagggaagcagca
gatgcataccagagggcaattttgttattacagacttcagaagaacagagtgcttatcag
gtcgcagtaagaaattatggccgattgttatgttccattggtgaatatgataaagctatc
caggcttttaaatcaacacctcttgaagagttagaagacatcataggttttgcactagct
ttatttatgaaggggctttataaagagagcagtaaagcctatgagagagccttgtctatt
gttgaatcagagcaagacaaagcccatatcttgacagcactggcaataacagaatataaa
caaggaaagatggatgtagccaagtcattgctattcaaatgctctatcttaaaggaacca
accacagaaagccttcaagccttgtgtgctctgggattggcaatgcaggatgctacactg
tcaaaagcagcacttaatgagctcctgaagcacatcaaacacaaagacagtgcttatcaa
aagtgccttcttacttcagcaatctatgcactccaaggtcgcagtgtggctgtgcaaaga
caagcatctaaagctgtccacagtaacccagctgacccttctctttggtccttgttgtcc
cgggctgttgctcagtatgctcaacgaaatgcaaagggaggtgcggtagcaggaaatgtg
gcttatattctggactcaaatcatggaaagaaggcattgctgtacactgcagtaaatcag
ttagcagtgggaagcagttcagcagaagatgaaaaaaatattgcactaaagaccattcag
aaggcagctcttctttctccaggtgaccctgctgtctgggctgggctgatggcagcttgt
catgctgatgataaactggctctagtgaacaacactccaccaaagagaatggatttatac
ttggcactgttgtctgctgtttctgcttcaattaaggacaaagaatttcttgaaaattac
aaccaatctcttgaaaagtggtctctgtctcaagctgtcactggtctaatagacacagga
agaatatctgaagctgaatctctctgcacaaagaatttaaaaagtaaccctgatcagcca
gctgttatattgcttttgagacaagttcaatgtaaatcactcttggaatcaaaaaagcca
cttccagatgctgtacttgaggaactgcaaaaaacagtcaagtccaactcaacctctgta
ccggcttggcagtggctggcacaggtgtatcagtctcaaggaatgatgggtgctgcagag
atgtgttacagaaagagtctacaagtggcatcccaacagggcagttggagtgggaagctc
tcaagtctgttgaaactagcactgcttgctctagaaatctgtatggctaatattcccaat
gatcactggccatccttggttcaagaggctaccactgaggccttgaaactttgtttttgt
ccactggctgttttcttacaagctttgttacaattcaaccgcaaaatgggggcaagagag
acacggcgacttttggagagagtggtgaatcagcctgggtatcccaaatctattgtgtca
gctgcacgttggtacctactgagacacctgtatgccaaaaatgactatgagcttattgaa
gtgttggtaaaaaatgctgaaactcacggagatacaagagcattggaactgaatcagaaa
ttgtcctcacaataa
DBGET
integrated database retrieval system
