Muscardinus avellanarius (hazel dormouse): 308263155
Help
Entry
308263155 CDS
T11987
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
mave Muscardinus avellanarius (hazel dormouse)
Pathway
mave04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mave00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
308263155 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mave04147
]
308263155 (COL18A1)
00535 Proteoglycans [BR:
mave00535
]
308263155 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
mave00536
]
308263155 (COL18A1)
Exosome [BR:
mave04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
308263155 (COL18A1)
Proteoglycans [BR:
mave00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
308263155 (COL18A1)
Glycosaminoglycan binding proteins [BR:
mave00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
308263155 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
308263155
NCBI-ProteinID:
XP_080552158
LinkDB
All DBs
Position
5:complement(<1126145..>1180849)
Genome browser
AA seq
1744 aa
AA seq
DB search
MAPDPSGRLRLLLLLTCCLAPAAADLLSLDWLWSTKIADSPGALVSQPQGSLPVQTSEAS
TTHVAPQDEPKPGTTPASPRPTLQDQEAGQSGTPATPAAPSSPGAPAASPGTKENIAGVG
AKILNVAQGIRSFVQLWDDATPTRVPAGPPPTDAPTLPGPSGSPQETRTALGLSSEAPSS
LSAHTTEPSTPAVPTQLPPSLDRTRAPLRGAPVPSATPGRAPLSSELGRAPPWKSLRYPG
RPQDLDGEGHFPVAAGPSQQHGYPAVLGHTPLLLPLVTGPLVTGLLGVHPVLSALPSEPA
LTGDGGPRVFHVADPTGPGLANNSVLRGGRPPTPAGLCLPLPPTLPVCSQLGIRRSWLPN
HLHHGSGEEVQAAAQAWGGLLQTPCHPFLAWFFCLLLAPPCGPGPPPSLPPCRQFCEALE
DACWSHLEGGRLPVACASLPAQEDGDCVFIGPAAESIGEEVGLPQLLGEPLPQQVTQIED
PDVGPAYAFGPDANSGQVARYHFRSPFFRAFSLLFHIQPTTDGPGVLFAITDAAQAVVSL
GVKLSGVQDGHQNISLLYTEPGTGQTRTATSFRLPAFVGQWARFALSVDSGSVTLYVDCE
EFQRVPLVRSPRGLELEPGAGLFVGQAGGADPDRFQGMIAELRVRGDPRVSPVHCLDEED
EDEDGASGDSGSGLEEDQELHREETGLSLKPSLPPTPPVTSPPLAGGSDTEDSRTEEMEE
ETTVSLLGAQTLPSTWDERVQSPGSIQEKEGLKGQKGEPGARGPPGPAGPQGPAGPLAQG
PDALPVPGAQGPPGPQGPPGKDGAPGRDGEPGDPGEDGKPGDMGPQGFPGTPGEVGPKGE
KGDPGVGARGPPGPQGPPGPPGPSFRPDKLTFIDMEGSGFGGDLETLRGPRGFPGPPGPP
GVPGLPGEPGRFGVNGSHAPGPAGLPGVPGKIGPAGIPGLPGPPGMPGKDGPPGRMGPKG
SLGDVGAPGPKGSRGDPGPIGAPGENGLIGAPGPAGPPGPPGPPGPPGPGLAAGFDDMEG
SGAPFWPTARGSNGAQGPPGPPGLKPHPAAYVPFVPFQGDTGADGARGFPGLPGREGAAG
PPGPKGDKGSLGEKGDPGKDGVGQPGLPGPPGPPGPVIYVSDQDKVLASVPGPEGRPGYA
GFPGPAGPKGDLGSKGEQGFPGPKGEKGEPGSIFSPDGRALGPTQKGAKGEPGFRGPPGP
YGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPV
YDSNAFVESGRPGPRGLRGLPGPSGPKGDKGEVGPPGPPGHFPFDILQLEAEMKGEKGER
GDTGQKGERGEPGASGGFFGSSAPGPPGPPGPPGYPGIPGPKGESIRGQPGPPGPQGPPG
IGYEGRQGPPGPPGPPGPPSFPGPHRQTVSVPGPPGPPGPPGPPGTMGTSSGVRIWATYQ
TMLDKAREVPEGWLIFVAEREELYVRVRNGFRKVLLEALTPLPYGTDNEVAALQPPVVQL
HEGNPYPRREHSYSTVRTWRADDILASPPRLPDPQPYPGVPHHHGSYVQGRPARPTSSPT
HIHQDFHPVLHLVALNSPLSGDMRGIRGADFQCFQQARAVGLTGTFRAFLSSRLQDLYSI
VRRADRGAVPIVNLKDEVLFPSWEALFSGSQGQLPPGARIFSFDGRDVLRHPAWPLKSVW
HGSDPSGRRLTESYCETWRSEVPGTTGQASSLLAGRLLEQKAAGCRNSYVVLCIENSFMT
FSSK
NT seq
5235 nt
NT seq
+upstream
nt +downstream
nt
atggctccggaccccagcggacgcctccgcctgctgctgctactcacctgctgcctcgcg
cccgccgcagccgacctgctgagcctggactggctgtggtccaccaagatcgccgactcc
ccgggtgcgctggtctcacagccgcagggcagcctgcccgtgcagacctcagaggcctcc
accacgcacgtggccccccaggatgaacccaagcccgggacaacgcctgccagccccagg
ccaaccctgcaggatcaggaggccggccagagcgggactcctgcaacccccgccgctccc
agcagccctggcgcccctgccgcaagcccaggcacgaaggagaatatcgccggggtggga
gccaagatcctgaacgtggcccagggcattcggagctttgtccagctgtgggatgatgct
acgcctacccgggtgcctgccggcccaccccccacggacgcccccacccttcctgggccc
tcaggctccccccaggagaccaggactgccctcgggctgagcagcgaagccccaagctct
ctgagtgctcatacaactgagcccagcaccccggcagtgcccacccagctgcctccctcc
ctggacaggacccgggcaccactgaggggggccccggtgccatctgcgaccccaggtaga
gctcctctgtcctccgagctgggcagggcccctccctggaaaagcctgcgctacccaggg
aggccccaggatctggatggggaaggacactttcctgtcgcagccggtcccagccaacag
cacggataccctgcggtccttgggcacacgccactcctgcttcccctggtgacgggtccc
ctggtgacgggtcttctgggcgtgcaccctgtactctctgcccttccttctgagccagct
ttaactggggacggtggccctcgggtgttccacgtggctgatcctacagggcctggtctt
gctaataactctgtactgcgcgggggccgtcccccgacgcccgccggcctctgcctgccc
ctgccacccaccctgccggtctgcagccagttgggcatcaggcgctcctggctgcccaac
cacctgcaccacgggagcggtgaggaggtgcaggccgccgcgcaggcgtgggggggcctg
ctccagacgccctgccaccccttcctcgcctggttcttctgcctgctcctggccccccct
tgcggcccaggcccgccgccctccctgccgccgtgccgccagttctgtgaggccctggag
gacgcgtgctggagccacctggaggggggccggctgcccgtggcctgtgcctcactcccc
gctcaggaggacggggactgtgtgttcattgggccggctgcagagagcatcggtgaggag
gtggggctgccgcagctcctgggggagcccctgccccagcaggtcacccagattgaggac
ccggatgtcggaccagcctatgccttcgggccggatgccaacagtggccaagtggcacgg
taccacttccgcagccccttcttccgggccttctcgctgctgttccacatccagccgacc
acggacggcccgggggtgctgtttgccatcacggatgccgcgcaggccgtggtctcgctg
ggagtgaagctctcgggggtgcaggacgggcaccagaacatctcgctgctctacacggag
cccggcaccggccagacccgcacagccaccagcttccgcctgcccgccttcgtgggccag
tgggcgcgcttcgcgctcagtgtggacagcggctctgtgacgctctacgtggactgtgag
gagttccagagggtgccactcgttcggtccccgcggggcctggagctggagcccggcgcc
ggcctcttcgtgggtcaggctggaggagcagaccccgacaggttccaggggatgatcgcg
gagctgagagtgcgtggggacccacgggtgagccctgtgcactgcctggatgaggaagac
gaggatgaggatggggcatctggagactctggaagtggcctggaggaggaccaggagctg
cacagggaggagacgggcctgtccctaaaacccagcctccccccaacacccccagtcact
tctccacccttggccggaggcagcgacacagaagattccagaactgaagaaatggaggaa
gagaccacggtgtctttgttaggagcccagaccctgcccagcacgtgggatgagcgtgtg
cagagcccagggagcatccaggagaaggaaggcctgaaggggcagaagggagagcctgga
gctcggggcccacctggccccgctggtccccagggccctgcaggccccttggcacagggc
cccgatgcactacctgtccccggggcacaggggcccccaggaccccaaggacccccaggg
aaggacggtgccccgggaagggatggtgagccgggagacccaggtgaagatggaaagccg
ggtgacatggggccacagggcttccccgggaccccaggagaagtgggccccaagggagaa
aagggagaccctggggttggggccagaggacccccaggaccccaaggtcctccaggccca
ccaggaccctccttcagacctgacaagctgaccttcattgacatggagggatccggcttc
ggcggtgacctggagaccctcaggggcccgcgaggcttccctggcccccccgggccccct
ggtgtcccaggcctacctggagagccaggccgctttggggtgaatggctcccacgctcca
ggacctgcgggccttcccggcgtgccagggaagatcgggcctgccgggattcctggcctc
ccgggccccccaggcatgccagggaaggacggcccgccgggaaggatgggcccgaaaggc
agccttggtgacgtgggcgccccaggacccaagggaagcaggggagaccccgggcccatt
ggtgctcctggggagaatggcttgataggcgcccctgggccagctggacctccaggaccc
ccaggaccccccgggccaccaggaccaggacttgctgctggatttgatgacatggagggc
tccggggcccccttctggccgacagcccgaggctccaacggggcacagggaccgcccggc
ccaccaggactcaagccccatccggctgcttacgtgccatttgtcccattccagggagac
actggagcagacggagcccgtgggttccctggcctccctggcagagagggcgcggctggg
cccccgggaccaaaaggagacaaagggagcctgggagaaaaaggtgacccagggaaggac
ggagtggggcagccaggcctccccggcccccccggccctcccgggcctgtcatctatgtg
tcggatcaggacaaagtgttggcgagtgtgccgggacctgagggcaggccggggtacgcc
ggcttccctgggcctgctggaccgaagggcgacctgggctccaaaggcgagcagggcttc
ccaggccccaagggtgagaagggggagccaggcagcatcttcagtccggatggcagagcc
ctgggccctacccagaagggagccaagggagagccaggcttccgaggacccccgggtcca
tatggccggcctgggcacaagggagagatcggctttccaggacggccgggtcgccctggg
atgaacggactgaagggagagaaaggggagcccggagacgccagcctcggcttcggcatg
aggggaatgcccggccccccagggcctccagggcccccagggcctcctgggacacccgtc
tatgacagcaacgcatttgtggagtctggccgccctgggcctcggggattacgagggctg
ccaggaccttctggaccaaagggcgacaaaggagaggtgggcccgcccggaccaccagga
cacttcccctttgacatcctccagctggaagctgaaatgaagggggagaagggagagcga
ggcgacaccggacagaagggcgagaggggtgagcctggggccagtggcggcttctttggc
tccagtgcgcctggccccccgggccccccaggcccgccgggctaccctgggattccgggt
ccaaagggagagagcatccggggccagcccgggccgccgggacctcagggacctccaggc
atcggctacgaggggcgccagggcccccctgggcccccaggacccccagggcccccctca
ttcccgggcccacacaggcagactgtcagcgttcctggccccccgggaccccctggccct
ccagggccccctgggaccatgggcacctcttcaggggtgagaatctgggccacgtaccag
accatgctggacaaggcacgtgaggtccccgagggctggctcatctttgtggccgagaga
gaggagctctacgtccgggtccgaaatggcttccggaaggttctgctggaggccctgacg
ccactcccatacgggacggacaacgaggtggctgccctgcagccccccgtggtgcagctg
cacgagggcaacccctacccccggagggagcactcctactccacagtgcggacctggcgg
gcagacgacatcctggccagccccccacgcctgccggacccccagccctaccccggggtc
ccgcaccaccatggctcatatgtgcaaggccggccggcccgccccacaagctcgcccacc
cacatccatcaggacttccatcctgtgctccacctggtcgcgctcaacagcccgctgtcg
ggcgacatgcgcggcatccgcggggcagacttccagtgcttccagcaggcgcgggctgtg
gggctgaccggcaccttccgcgccttcctgtcatcgagactgcaggacctctatagcatc
gtgcgccgtgcggaccgcggggccgtgcccatcgtcaacctcaaggatgaggtgctgttt
cccagctgggaggccctattctcgggctcccagggccagctgccgccaggggcccgcatc
ttctctttcgacggcagggatgtcctgaggcacccagcctggcccttgaagagtgtgtgg
catggttctgaccccagcgggcgcaggctgaccgagagctactgtgagacgtggcggtcg
gaggtccccgggaccacaggccaggcctcctccctgctggcgggcaggctgctggagcag
aaggccgccggctgccgcaacagctacgtcgtcctctgcattgaaaacagtttcatgacc
ttctcctccaagtag
DBGET
integrated database retrieval system
